Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01000 ATGAAGTTCATGAAACTTGGATCAAAATCTGATAGCTTTCAGAATGATGGGACCAATGTTAGGTATGTTGTAGGTGAATTAGCAACAGACATCACTGTTATTGTAGGGGATGTCAAGTTTTACCTCCATAAGTTTCCCCTTCTGTCAAAGAGTGCTCACTTGCAGAAGTTGGTCACAGCTGCCACTGGGGAGCACAATGATGAAATATACATTCCAGAGATCCCGGGTGGTTCTGCAGCATTTGAGATATGTGCCAAATTCTGTTATGGGATGACCGTTACTCTTAATGCCTATAACGTAGTTGCAGCCCGTTGTGCTGCTGAATACCTAGGAATGCATGAGACAGTTGAAAAGGGAAACCTCACCTACAAAATCGACGTTTTCCTTAGTTCGAGCATCTTTCGTAGCTGGAAGGATTCAATCATTGTTCTTCAGTCCACAAAGGCGTTAATGCCATTATCTGAGGAACTGAAATTAGTAAGCAATTGCTTAGAATCTATTGCTGTGAAGGCCTCTGCTGATATTTCTAAAGTTGACTGGTCTTACACATATAACCGCAAGAAACTACCTGAGGAAAATGGGAACAATCCCAACTGGAATGGCGTCAGGAATCGTAGTGTGCCGAAGGACTGGTGGGTTGAGGATCTTTGTGAGCTAGAAATTGATGTATATAAGCGTGTTATAACGAGTATAAAAAACAAAGGAATAGTCCCTAATGATGTGATTGGAGAAGCACTGAAAGCTTATGCTTACCGTTATCTTCCAGGCTTTAGCAAAGGTGTGCTTCAATGTGGGGATCCACTGAAGTATCAGTCGGCAGTGTCGACAATTGTCTGGCTGTTACCTGCTGAGAAAGGCAGTGTTTCCAGTAGTTTCTTGTCCAAATTGCTGAAAGCATCCATTTTCCTAGCATCTGGAGATGAGACCAAAGAAGAGCTCGTTCGACGAATGGGACAGCAGCTAGAGGAGGCTATAGTGAGTGATCTTTTGCTGCGAGCACCGGAAGGTGAAGCTACGACTTATGATGTTAATGCTGTACAGAAAATGGTGGAGGTGTTTCTGTTACAAGATCATAGTAGCGAAATCGAGTCACTTGAAGAGGTAAATGAGCTTCAGGAGCCAAGAGGGCCAGGGATTTTATCGGATGCTACTAAGTTGATGGTGGCAAAATTGATTGATGGTTACCTTGCTGAAGTTGCAAAAGATCCCAACCTATCATCAGTAAAGTTCATTGATCTTGCAGAGATGGTATCTTGCATCGCTCGGCCTTCACATGACGGGCTCTATCGAGCCATAGACATGTATCTGAAGGAACATCCAGGGATTGGCAAGAGTGATAAGAAGAGAATCTGCAAACTGATAGACTGCAAGAAACTATCCGCTGATGCGTGCATTCATGCTGTACAAAATGAACGGCTCCCTCTACGTATGGTTGTGCAGGTATTGTTTTTTGAGCAAGTCAGGGCCTCAGCATCATCAGGCAGCAGCACTCCCGACCTACATAAAGGCATCAAGGATCTAACGAGTGGGTCTCACAGCAGCTCAAGATCAGCCACGACGAATCCCGAGGAAGATTGGGATGCTGTTGCCATGGCTGAGGAGCTCAAGGCTCTCAAAGGGGAGCTAGCTTCCTTGAGGCTTGCTACTGGTAAAGGAAGTAATGAGAGGAATGGAGATGGTAAAAATGGAATTGACAAAGCAGCTCTTAGTAAAATGAAAGGATTGCTCAAGTCAAAGAAGCTTTTCACAAAGCTATGGTCAAGCAAAGGAGGAGGATATGGCGAAAACAGTGGCTCGGATTCATCGGAGAGCCTTGGTTCTGCAAATCAGGAGGAAGCTAAGTCAACACCTTCCAGGAACAGAAGGCATTCAGTTTCTTAG 1881 44.39 MKFMKLGSKSDSFQNDGTNVRYVVGELATDITVIVGDVKFYLHKFPLLSKSAHLQKLVTAATGEHNDEIYIPEIPGGSAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLGMHETVEKGNLTYKIDVFLSSSIFRSWKDSIIVLQSTKALMPLSEELKLVSNCLESIAVKASADISKVDWSYTYNRKKLPEENGNNPNWNGVRNRSVPKDWWVEDLCELEIDVYKRVITSIKNKGIVPNDVIGEALKAYAYRYLPGFSKGVLQCGDPLKYQSAVSTIVWLLPAEKGSVSSSFLSKLLKASIFLASGDETKEELVRRMGQQLEEAIVSDLLLRAPEGEATTYDVNAVQKMVEVFLLQDHSSEIESLEEVNELQEPRGPGILSDATKLMVAKLIDGYLAEVAKDPNLSSVKFIDLAEMVSCIARPSHDGLYRAIDMYLKEHPGIGKSDKKRICKLIDCKKLSADACIHAVQNERLPLRMVVQVLFFEQVRASASSGSSTPDLHKGIKDLTSGSHSSSRSATTNPEEDWDAVAMAEELKALKGELASLRLATGKGSNERNGDGKNGIDKAALSKMKGLLKSKKLFTKLWSSKGGGYGENSGSDSSESLGSANQEEAKSTPSRNRRHSVS 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23334613 23339511 + ClCG10G010500.1 Cla10g01000 282659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01000 626 MobiDBLite consensus disorder prediction 589 626 - -
Cla10g01000 626 Coils Coil 528 548 - -
Cla10g01000 626 PANTHER OS12G0117600 PROTEIN 1 623 IPR043454 -
Cla10g01000 626 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Cla10g01000 626 MobiDBLite consensus disorder prediction 492 524 - -
Cla10g01000 626 ProSiteProfiles NPH3 domain profile. 210 488 IPR027356 -
Cla10g01000 626 Pfam NPH3 family 210 464 IPR027356 -
Cla10g01000 626 Gene3D Potassium Channel Kv1.1; Chain A 13 121 IPR011333 -
Cla10g01000 626 MobiDBLite consensus disorder prediction 507 522 - -
Cla10g01000 626 Pfam BTB/POZ domain 28 117 IPR000210 GO:0005515
Cla10g01000 626 MobiDBLite consensus disorder prediction 590 614 - -
Cla10g01000 626 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 623 IPR029960 GO:0009958
Cla10g01000 626 SUPERFAMILY POZ domain 22 117 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01000 - - - csv:101210637 1113.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02588 Cla-Chr5:37138626 Cla10g01000 Cla-Chr10:23334613 1.55E-157 dispersed
Cla08g01367 Cla-Chr8:26553141 Cla10g01000 Cla-Chr10:23334613 6.10E-176 dispersed
Cla10g01000 Cla-Chr10:23334613 Cla10g00910 Cla-Chr10:21713889 1.52E-120 dispersed
Cla01g01135 Cla-Chr1:18948351 Cla10g01000 Cla-Chr10:23334613 6.60E-118 transposed
Cla01g01709 Cla-Chr1:32032599 Cla10g01000 Cla-Chr10:23334613 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g01000 Cla_Chr10 FPKM 6.032671 7.816843 3.560181 3.820545 4.687626 3.748614 2.985193 0.570623 0.765611 0.822556