Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01002 ATGGCGAAAGAAGCCGGCTCGTCCTCTTCCAACCCACTGCTACTCATACTCGAAGAAGAAGCTGAGGAAGAACTCTTGTACGGCGCCGAATCGGGATGGGTCGAGGCTCTAACTTCTTGCGATCATCTCGTTTCCCTATCTTCCGACCTCACTCACATTCCGCCCCCTGATACTCCCTGCACCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCATCATTTTGAGCAATCAACTCATTGCCTTGCACTCAGCTACAGTGATTTGTCGGTTTGGTGCTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTGAAATTTGGTGAGGCCCCGCCATTTCGATAG 435 48.05 MAKEAGSSSSNPLLLILEEEAEEELLYGAESGWVEALTSCDHLVSLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLHHFEQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23359365 23361725 + ClCG10G010510.2 Cla10g01002 282661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01002 144 ProSiteProfiles Zinc finger UBP-type profile. 38 137 IPR001607 GO:0008270
Cla10g01002 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 141 IPR013083 -
Cla10g01002 144 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 1 144 - -
Cla10g01002 144 Pfam Zn-finger in ubiquitin-hydrolases and other protein 60 118 IPR001607 GO:0008270
Cla10g01002 144 SUPERFAMILY RING/U-box 38 130 - -
Cla10g01002 144 SMART Zf_UBP_1 59 108 IPR001607 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01002 - - - csv:101211376 265.388
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01002 Cla-Chr10:23359365 Cla09g00282 Cla-Chr9:2743796 2.31E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g688 . . . . . . Bma05g00656 . . . . . . . . . . . . . . . . . Cla10g01002 Cam10g1025 Cec10g1056 Cco10g1020 Clacu10g1042 Cmu10g1826 Cre10g1199 . . Cone3ag1022 . . . . . . . . . . . . . Sed13g0450 Cmo04g00487 . . . . . . Cpe01g00407 Bhi11g01143 Tan01g0644 Cmetu07g0339 . Hepe07g0422 Mch10g0452 . . . . . . . . . . . Cme07g02174
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011357 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g01002 Cla_Chr10 FPKM 6.086395 6.889961 34.617882 35.013149 96.193413 91.35762 99.531059 16.04669 16.959595 18.361567