Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01008 ATGGATTCAGCTTGCTTGAACTTGGACTCTGTTTCAGCATCGGAAAATCGAAGTAACAAACTCACTGCTGTCGATTCGGAGAGTAAGAAGAACGACTCTGGCGAGCCTGTTTCTGCAAGCTCGAAAAATGGAAGGAGAAAATTTTTGAAAGAGACAAGCCAATCAACAATGCACGGTCTTAACAAATTTACATCACAAATCAAGAAGCCTCCTCACAGGAAGGTTTCCCCTATCAAGTGGTTCCCACGCAAGAACGTGGACTCTTACTTGAAGAGAAAAATTAAAATGTTGCAGGAAGTAGATGGTCTGAATTTAACATTAGATGAGACTTTAGGGGATTCTAATCCACATTACTCCAGATTATTGAAAGAAAAGATGGCAGCAAGAGAGGCAGCATATAAAGCAATGAAAGCTCGAAAAGCAGCTTTGGTCGAAACCTCTTGGTGTAGAATACTCCGAGCGGCGAGAATTCAATGTAAAGAAGCTGAAGAGCAAATGTACAGAGCTGAGAAAACTGCAGCTGAAGCTTTCAAAGCAGCTGCAGCTATGGGAGTGATCATGTATGATACACCCAACTGTCCACAGAAGACATACAAAATGGAAACTTCATCTTCTGGTGGTGGTGAGACTACAACTCACACCATTACAGCATCTTTTGAGACAGAATTTGAGTTTGATAAGAAAGTGGCTGCAGCAGTAAAAACAGCATTGGTTAGGCTTGCGAGTTGCTCTTCTTTTAGAGAAGATGACTTTAAAGAACTCTTACGAAAAATCTCTCAGAACCCAGATTGTGATACTAATGTAGGCCCATCCGAGATTTCTTTTGAATGTAAATCAGATAATGGCTTAGAACTTGATCCAGCGCCTCGGAAGTCTGATTTCAGCTCTCACAATTTGGATTGCAAGAAGCTGGATTTACATATGAGGCAGAAAACTTTTGAGGAAGAGACCAAGATTGAGGACTTGATGTATGAAAGGCTTAGGCGTTTGAGAGAAGATGAACTTTCCTCTCTTGCCACCATAGTTGCAACTTGTGGTTTAAATGCTGCCTTGGCTGAGGTAGAAAGTGGGAAGCGTTATGATTTTCACAATGGAAGGAAGCAAGTTGAGTCAGAACTTCCCAGCCTAGATAAATTCTTGGTAAAGCATGTAACTAAATTGGAAAGAGAAGTGCTTGAAGCAAAGAATAGCAGAGAGAACAAAGAAAAGGAACTAGCCTCGAATAATTCCGAAACGACAACTATCAAAGAGAAGATTGACTTACATAATTCTACATCACAAAACCTTCCAAAATTGAGCAGTATTCAGGATGAGAAAGTTGTTCTCAGCTTGGAACCTATGCAAACAAAGCCTCCTTCAGAGCTTGAGAAGGAAGTTAAAGAGACTAGATGCAAACGGGTAGAAGAATTCAAGACCTGTAGCAAGAAGTTGCAGGCAAGGCAAAGATTTGTTAGTCATAAAGAAGTTGTATCAGCAGTTCCTAGTCTTGATAAGTATCTTGTGAAACATGTCTCACGGCTTGAAAAAGAAGTACAAGAAGCGAAAAACAGAAGGAAAGTTGAGCTGCATGAAGAATCATTGATGGAAGCAGAGGGAAAGGAAAATGTTCATATGCCAAAGTCTCCATTGAAGATGGGAAGGGACATGGAAGACAGCCTAGACAAGATCTTAGTGAAGCCAGTGCACAGGCTGGAAAGGGAAAAGATGTTGGCCGTGTTAGCTGAAAGTAACAATAACCAAAAAAAAAATAAGAAACAGGTGGATAATCATACATCAGATTGCCAAAGCTTGAGCGAAATTTTAGTAAAGCATGTCTCAAGACTGGAGAAAGAGAAAATGAGAAGCAAAGAAGAGAACAACCTAAAGAGAAGTGAAAGAAATATGCATTCAATGATCAATGGAGGAGGAGATGGTGGGGGTTTAGGTGAGATTTTGGTTAAACATAAATCAAAACTCGAGAGAGAAAAGCTGATGTCTTATCAGGAGTCAGAAAATCAGAACAAAAGTTTTCTAAAGCGTTGTGAAGCTAGGGTGAAAGACGACCTACAATCAACTTGGGGAGGCTTAAGTTTGGGAGATTCCATGAAACCTCATCTCTCCAAACTTGAACGAGACAAGGCTGCCTGGATCAAAGCTGAAGAGGAGGAAAGGAAGCAAGTTATGAACAAAGTGTAA 2175 40.46 MDSACLNLDSVSASENRSNKLTAVDSESKKNDSGEPVSASSKNGRRKFLKETSQSTMHGLNKFTSQIKKPPHRKVSPIKWFPRKNVDSYLKRKIKMLQEVDGLNLTLDETLGDSNPHYSRLLKEKMAAREAAYKAMKARKAALVETSWCRILRAARIQCKEAEEQMYRAEKTAAEAFKAAAAMGVIMYDTPNCPQKTYKMETSSSGGGETTTHTITASFETEFEFDKKVAAAVKTALVRLASCSSFREDDFKELLRKISQNPDCDTNVGPSEISFECKSDNGLELDPAPRKSDFSSHNLDCKKLDLHMRQKTFEEETKIEDLMYERLRRLREDELSSLATIVATCGLNAALAEVESGKRYDFHNGRKQVESELPSLDKFLVKHVTKLEREVLEAKNSRENKEKELASNNSETTTIKEKIDLHNSTSQNLPKLSSIQDEKVVLSLEPMQTKPPSELEKEVKETRCKRVEEFKTCSKKLQARQRFVSHKEVVSAVPSLDKYLVKHVSRLEKEVQEAKNRRKVELHEESLMEAEGKENVHMPKSPLKMGRDMEDSLDKILVKPVHRLEREKMLAVLAESNNNQKKNKKQVDNHTSDCQSLSEILVKHVSRLEKEKMRSKEENNLKRSERNMHSMINGGGDGGGLGEILVKHKSKLEREKLMSYQESENQNKSFLKRCEARVKDDLQSTWGGLSLGDSMKPHLSKLERDKAAWIKAEEEERKQVMNKV 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23406967 23410619 - ClCG10G010570.2 Cla10g01008 282667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01008 724 Coils Coil 605 627 - -
Cla10g01008 724 MobiDBLite consensus disorder prediction 1 46 - -
Cla10g01008 724 MobiDBLite consensus disorder prediction 576 595 - -
Cla10g01008 724 Coils Coil 384 411 - -
Cla10g01008 724 Coils Coil 699 724 - -
Cla10g01008 724 Coils Coil 504 524 - -
Cla10g01008 724 MobiDBLite consensus disorder prediction 397 422 - -
Cla10g01008 724 MobiDBLite consensus disorder prediction 1 21 - -
Cla10g01008 724 PANTHER MYOSIN-2 HEAVY CHAIN-LIKE PROTEIN 1 721 - -
Cla10g01008 724 Coils Coil 152 179 - -
Cla10g01008 724 MobiDBLite consensus disorder prediction 407 422 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01008 - - - csv:101216997 1013.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g681 Blo02g00938 . . Bda08g00672 . . . . . . . . . . . . . . . . . . . . Cla10g01008 Cam10g1031 Cec10g1062 Cco10g1026 Clacu10g1048 Cmu10g1832 Cre10g1204 . . Cone3ag1018 . . . . . . . . . . Bpe05g00481 . . . Cmo04g00492 Cmo16g00350 . . . . Cpe14g00275 Cpe01g00412 Bhi11g01151 . . . . . . . . . . . . . Lsi03g01036 . . Cme07g02168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006087 2 6 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g01008 Cla_Chr10 FPKM 20.777641 17.593586 5.860214 6.477057 8.259625 8.426216 6.737278 23.105463 17.444935 21.765791