Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01009 ATGAGTGCGAGTTCTCTGGTAGCTGAAGCTGTGTGGAAGCAGATCGAGTCGACTCGATTAGTGACTGATGATCAGCTTTCAGTCTTGCATTTCTTGTTTGGCAAGAACTTCGAGCGAGCTACGCGAATTGTTGATCAAAGAGGAGTGAAGAAGATTTCAGGCGAGCCAAGCAGACGGTCTATGTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGTATTTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATGCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTTGCAAGCATCAGTTGGCTGCAAGGCTTGCTGCTTCAGTGGGGGCTTGCATTGAAGTTAAATGCTTGAGGTTTGAGAGGTTACATCTTCATTTCTTGAAGGGCAGATGTAACTTTTTGGTGATGTACAACACGAAATGTAGATTTTTTCCCACCTTCCATCTGAGATTGAACCTATTTAAGATTTAG 483 43.27 MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKCLRFERLHLHFLKGRCNFLVMYNTKCRFFPTFHLRLNLFKI 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23412997 23416023 + ClCG10G010580.2 Cla10g01009 282668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01009 160 ProSiteProfiles Zinc finger SWIM-type profile. 62 111 IPR007527 GO:0008270
Cla10g01009 160 PANTHER ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 7 2 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01009 K25770 ZSWIM7, SWS1; zinc finger SWIM domain-containing protein 7 - csv:101210144 229.565
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g671 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g01009 Cam10g1032 Cec10g1063 Cco10g1027 Clacu10g1049 Cmu10g1833 Cre10g1205 . . . . . . . . . . . . . Bpe05g00482 . . Sed07g1273 Cmo04g00493 . . . . . . Cpe01g00413 Bhi11g01166 Tan01g0656 Cmetu07g2110 . Hepe07g0429 Mch10g0459 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009565 3 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 0 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g01009 Cla_Chr10 FPKM 27.387657 29.808546 19.606062 19.846554 22.141453 19.82049 21.494987 16.889641 17.182606 17.538221