Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01010 ATGGAGAAGAAACCCAGCTTCTTCTCTGCTCTGAAAGAGGAGGTCATTCGTGGCCTGTCGCCGTCGCGTTCTCGCGCCAAAAGTCCCGCCAGAACTGCTTCCCCTTTCTCCATTTTGTTGCGTAGAAAGAAGAATCAGTACGTCGCTCATGCTGGGATTCCGCAGCAGTTCATTGCGCGATCCGGTAGTTTCCGGCCAGTTGGGGAGGCTCTTACACCGCTGGTGGAGGGTCCTGATCCGGACGCCGGCGAAATCGGCGATTCCAAGAGGATCAGTTCGGGGTTAGGGCAATGGATGAAAGGCCAACTCTCTCGAACTCCCTCTATTGCTTCTTCCATGGCGAATAAGAGGTCTGATTTGAGACTTTTGCTTGGAGTTATGGGTGCTCCTCTTGCTCCTCTGCATGTTAGCACCTCCGATCCTCTGCCCCACCTCAGTATAAAAGATACCCCCATTGAAACTTCATCAGCTCAGTACATATTGCAACAATACACAGCAGCATCTGGTGGGCAGAAGCTTCAAAACTCCATCAGAAATGCATATGCAATGGGGAAGCTTAGGATGGTTGCTGCTGAGTTTGAAACTGCAACAAAGGTGATGAAGAGCCGAAATCCGGCGACCCGAGCCGAATCCGGTGGCTTTGTGCTCTGGCAGATGAATCCAGACATGTGGTATGTTGAGCTTGCAGTTGGAGGCAGTAAAGTTCACGCTGGGTGCAATGGAAAGCTTGTTTGGAGGCATACTCCCTGGCTTGGTGCTCACACTGCGAAAGGACCAGTTCGACCTTTGCGCCGTGCACTTCAGGGTCTTGATCCTAGAACAATAGTGAGGATGTTTGCTGATGCAAGATGCATAGGAGAGAAGAAAATCAATGGTGAGGATTGCTTCATCCTTAAGCTCTGTGCTGACCCTCAAACGTTGAAGTCAAGAAGCGAAGGTCCGGCAGAGATCATAAGGCATGTCATGTTTGGCTACTTCAGCCAGAAAACAGGATTGCTGGTGTACATGGAAGATTCTCATCTAACCCGGATTCAATCCAACGGCGGAGATGCAGTTTACTGGGAAACCACAATCAATTCGTTCCTCAACGATTACAGGCCTGTTGAAGGTATCATGATCGCACATTCTGGCCGCTCTGTGGTCACACTCTTCAGATTTGGTGAAATGGCCATGAGTCATACCAAAACAAAGATGGAAGAAGCCTGGACAATCGAAGAGGTTGCGTTCAATGTCCCCGGCCTATCAATGGACTGCTTCATTCCCCCAGCTGACTTGAGATCATGTTCTATCAGTGAGGCCAGTGAGCTTCCTCAGGATGAAAGGGCAAAAAGTGCAATTGCATTAGCGGCACACCGAGCTAAAGTTGCTGCACTGGAAAAGCCCGAGGACGACTGTATGGATAACATGACATGGAAATCGGATTTCTAA 1428 49.72 MEKKPSFFSALKEEVIRGLSPSRSRAKSPARTASPFSILLRRKKNQYVAHAGIPQQFIARSGSFRPVGEALTPLVEGPDPDAGEIGDSKRISSGLGQWMKGQLSRTPSIASSMANKRSDLRLLLGVMGAPLAPLHVSTSDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIRNAYAMGKLRMVAAEFETATKVMKSRNPATRAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTIVRMFADARCIGEKKINGEDCFILKLCADPQTLKSRSEGPAEIIRHVMFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLNDYRPVEGIMIAHSGRSVVTLFRFGEMAMSHTKTKMEEAWTIEEVAFNVPGLSMDCFIPPADLRSCSISEASELPQDERAKSAIALAAHRAKVAALEKPEDDCMDNMTWKSDF 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23421525 23423708 - ClCG10G010590.1 Cla10g01010 282669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01010 475 Pfam Protein of unknown function (DUF620) 181 422 IPR006873 -
Cla10g01010 475 PANTHER LIPASE 1 474 IPR006873 -
Cla10g01010 475 PANTHER LIPASE 1 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01010 - - - csv:101209895 915.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01952 Cla-Chr5:31325392 Cla10g01010 Cla-Chr10:23421525 5.44E-103 dispersed
Cla05g02091 Cla-Chr5:32541500 Cla10g01010 Cla-Chr10:23421525 0 dispersed
Cla09g02228 Cla-Chr9:39867677 Cla10g01010 Cla-Chr10:23421525 3.19E-132 dispersed
Cla10g01010 Cla-Chr10:23421525 Cla11g00618 Cla-Chr11:7093037 6.89E-118 dispersed
Cla10g01010 Cla-Chr10:23421525 Cla08g01607 Cla-Chr8:28700581 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g665 Blo02g00940 Blo03g00082 Bda06g01212 Bda08g00670 Bpe07g00265 . Bma05g00668 Bma12g00271 . . . . . . . . . . . . . . . . Cla10g01010 Cam10g1033 Cec10g1064 Cco10g1028 Clacu10g1050 Cmu10g1834 Cre10g1206 Cone12ag1059 Cone8ag1093 Cone3ag1013 Cone10ag1030 . . . . . . . . . Bpe05g00485 . . . Cmo04g00494 Cmo16g00351 . . . . Cpe14g00276 Cpe01g00414 Bhi11g01168 Tan01g0658 . . . Mch10g0460 . . . . . . . . Lsi03g01038 . . Cme07g02166
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000467 4 3 4 6 4 3 6 3 3 3 3 3 6 3 3 5 3 8 6 3 3 4 3 3 3 3 3 7 4 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g01010 Cla_Chr10 FPKM 20.35924 15.591079 21.0965 18.656487 18.825817 20.666006 21.246222 22.162949 21.623018 23.681482