Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01011 ATGAAGAAGCTTTTCTTTTTCACATTCTTGCTTTCCTTTCTTCTCTTCACATCTTCCTTCCCAGACATCGCCATTGCCAAGTCCGTGTTTTGCGACAACGCATGCAAGAAGAGATGCTCAAAGGCAGGAGTGATGGATAGATGCATAAAGTATTGTGGGATTTGCTGTGACTATTGCAAGTGTGTTCCTTCTGGAACTTATGGGAACAAACATGAGTGCCCTTGTTATAGGGACATGAGGAGTTCTAAGGGTAAGCCCAAGTGCCCTTGA 270 44.07 MKKLFFFTFLLSFLLFTSSFPDIAIAKSVFCDNACKKRCSKAGVMDRCIKYCGICCDYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23470742 23471147 + ClCG10G010600.1 Cla10g01011 282670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01011 89 Pfam Gibberellin regulated protein 30 89 IPR003854 -
Cla10g01011 89 PANTHER SNAKIN-1 5 89 - -
Cla10g01011 89 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 5 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01011 - - - pop:7469612 137.887
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01606 Cla-Chr8:28691826 Cla10g01011 Cla-Chr10:23470742 8.32E-07 dispersed
Cla10g01011 Cla-Chr10:23470742 Cla11g00782 Cla-Chr11:11300738 6.41E-16 dispersed
Cla10g01300 Cla-Chr10:27912375 Cla10g01011 Cla-Chr10:23470742 6.23E-14 transposed
Cla01g01683 Cla-Chr1:31785491 Cla10g01011 Cla-Chr10:23470742 4.46E-25 wgd
Cla10g01011 Cla-Chr10:23470742 Cla02g00665 Cla-Chr2:7636208 3.47E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g663 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g01011 Cam10g1034 Cec10g1065 Cco10g1029 Clacu10g1051 Cmu10g1836 Cre10g1207 Cone12ag1060 . . . . . . . . . . . . . . . Sed08g1334 . . . . . . . . Bhi11g01169 Tan01g0659 Cmetu04g1335 . . Mch10g0461 . . . . . . . . Lsi03g01039 . . Cme07g02163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001419 2 3 0 2 2 3 2 3 3 1 3 3 2 3 2 2 3 2 2 3 3 3 2 0 3 3 3 2 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g01011 Cla_Chr10 FPKM 60.403809 71.456001 46.637718 50.149128 169.723587 179.176392 168.893616 63.376972 64.368622 64.546944