Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01116 ATGGAGGAAACTTTTGTTCCTCTTCGTGGAATTAAGAATGACCTGAAAGGGAGATTAGTGTGTTACAAACAAGACTGGACTGGTGGTTTGAGAGCTGGATATAGGATTTTGGCTCCCACCACTTACATATTCTTTGCCTCTGCAATTCCTGTCATTTCATTTGGTGAACAGTTGGAGAGAAGTACTGATGGGGTGTTGACTGCAGTTCAAACCTTAGCCTCCACAGCTCTTTGTGGGATCATTCACTCCATTGTTGGAGGTCAACCTTTGCTCATCTTGGGTGTTGCGGAGCCCACGGTTATTATGTACACCTTCATGTTTAATTTTGCTAAGGAACGTCCCGAGTTGGGCCGGAATTTGTTTCTAGCATGGAGTGGATGGGTGTGTGTTTGGACTGCAGCCTTGCTGTTCTTAATGGCTATATTAGGTGCTTGTTCCATCATCAATAGGTTCACACGTCTGGCTGGTGAACTGTTCGGTTTGCTTATCGCGATGCTTTTCATGCAGCAAGCGATCAAAGGACTTGTGGATGAGTTTCGCATCCCAGAACGGGAAAATCCAAAATTGCTCCAGTTTATACCTTCTTGGAGGTTTGCCAATGGGATGTTTGCTTTGGTACTATCATTTGGCCTTCTACTCACTGCTTTAAGGAGCCGAAAAGCCCGGTCATGGCGATATGGATCAGGTTCGCTCAGAAGCTTGATAGCAGACTATGGAGTACCGCTCATGGTTCTTGTTTGGACAGGTATTTCTTATATACCTTCAAAAAGTGTCCCACAAGGAATCCCAAGGCGACTCTTCAGCCCCAATCCATGGTCTCCCGGTGCGTATGAAAATTGGACTGTTATCAAGGATATGCTTGACGTTCCAGTTTTCTATATCTGTGGAGCTTTCATCCCCGCTACGATGATTGCGGTGCTTTACTATTTTGACCATAGTGTTGCATCTCAACTTGCTCAGCAGAAAGAGTTCAATTTGAGGAAGCCATCTTCTTACCATTATGATTTACTTCTATTGGGATTCTTGACCTTAATATGTGGTCTTCTTGGAATCCCTCCATCCAATGGAGTCATCCCACAATCTCCAATGCATACAAAGAGCCTGGCTACTCTCAAACACCAGTTGCTGCGGAATAAACTTGTAGAGACAGCACGAAGTAGTATGAGAAAGAATGCTAGCTTAGGACAGTTGTATGGAAGTATGCAACAAGCATATCAACAAATGCAGACCCCCTTGATCTACCAACAGCCTTCAATTCGTGGACTGAATGAGCTAAAAGAGACAACCATTCAAGCAGCTTCTAGTATGGGCAGCTTCGATGCTCCGGTCGACGAGACAATATTTGATATCGAAAAGGAAATTGATGATTTATTGCCTGTTGAGGTGAAAGAACAACGGGTCAGTAATTTGCTTCAAGCTATAATGGTGGGAGGATGCGTTGCAGCCATGCCAGTCCTGAAAAAGATCCCGACCTCAGTTCTATGGGGTTACTTCGCTTTTATGGCCATCGAAAGCTTGCCTGGTAACCAGTTTTGGGAAAGAATCTTGTTGCTCTTTACTGCACCCAGCAGAAGATACAAAGTTCTTGAGGATTACCATGCGACTTTCGTCGAAACCGTGCCATTCAAATCCATTGTACTTTTTACCATTTTTCAAACAGTATATTTGTTCATATGTTTTGGACTAACATGGGTTCCGATTGCCGGGGTGATGTTTCCTCTGATGATCATGCTCCTCGTCCCTGTAAGACAATACCTTCTTCCCAAGTTTTTCAAAGGGGCACATCTCCAAGACCTTGATGCTGCCGAATACGAAGAAGCACCGGCTTTACCGTTCAATCTTGCAACAGAAGCCGAGCTGGGCGCTGGAGCATCTTTCGGTGGGGATGGAGAGATTTTAGATGAGGTTATCACCCGAAGCCGCGGTGAGTTTAGGCGTATTAGCAGTCCTAAAATCACAAGCTCCACAGCAACACCAATATCTGACCGAAAAAGTATAGACAGCCCTCATCGCTCTTTCAGCCCTCGGTTGAGCGAGCTAAGAGGAGAGCACAGTCCTCGAGCTGGTGGACGAGGGACACCAGGTCAGAGGAGTGCAGAAGCTAAACCATCCAGTCTGGGAAAGAGCCCTCTTAATAACACAGCATCAAAGTAA 2154 45.36 MEETFVPLRGIKNDLKGRLVCYKQDWTGGLRAGYRILAPTTYIFFASAIPVISFGEQLERSTDGVLTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFLMAILGACSIINRFTRLAGELFGLLIAMLFMQQAIKGLVDEFRIPERENPKLLQFIPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGSLRSLIADYGVPLMVLVWTGISYIPSKSVPQGIPRRLFSPNPWSPGAYENWTVIKDMLDVPVFYICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVETARSSMRKNASLGQLYGSMQQAYQQMQTPLIYQQPSIRGLNELKETTIQAASSMGSFDAPVDETIFDIEKEIDDLLPVEVKEQRVSNLLQAIMVGGCVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDYHATFVETVPFKSIVLFTIFQTVYLFICFGLTWVPIAGVMFPLMIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPALPFNLATEAELGAGASFGGDGEILDEVITRSRGEFRRISSPKITSSTATPISDRKSIDSPHRSFSPRLSELRGEHSPRAGGRGTPGQRSAEAKPSSLGKSPLNNTASK 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25530225 25534528 + ClCG10G011700.1 Cla10g01116 282775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01116 717 PANTHER BORON TRANSPORTER 2-RELATED 1 699 - -
Cla10g01116 717 MobiDBLite consensus disorder prediction 698 717 - -
Cla10g01116 717 MobiDBLite consensus disorder prediction 664 686 - -
Cla10g01116 717 MobiDBLite consensus disorder prediction 648 663 - -
Cla10g01116 717 Pfam HCO3- transporter family 8 180 IPR011531 GO:0006820|GO:0016021
Cla10g01116 717 Pfam HCO3- transporter family 202 373 IPR011531 GO:0006820|GO:0016021
Cla10g01116 717 Pfam HCO3- transporter family 460 550 IPR011531 GO:0006820|GO:0016021
Cla10g01116 717 MobiDBLite consensus disorder prediction 648 717 - -
Cla10g01116 717 Gene3D Helical hairpin bin 18 60 - -
Cla10g01116 717 PANTHER ANION EXCHANGE PROTEIN 1 699 IPR003020 GO:0005452|GO:0006820|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01302 Cla-Chr1:26369501 Cla10g01116 Cla-Chr10:25530225 0 dispersed
Cla08g01308 Cla-Chr8:25973518 Cla10g01116 Cla-Chr10:25530225 0 dispersed
Cla10g01116 Cla-Chr10:25530225 Cla07g01228 Cla-Chr7:29250432 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01116 K24194 - csv:101205388 1394.79