Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01121 ATGGCAGCCATGGCTCTTTCATCTACATTCACAGGAAAAGCTGTTCCTTTGAATGCACCGACCGAGCTCTCATCCTTGGTTCGCAGCAATGGTAGAGTCTCAATGAGAAGATCTGGAAAGCCAGCGGCTTCCTCAGGCAGCCCATGGTATGGTCCGGACCGTGTCAAGTACCTTGGACCATTCTCTGGTGAGCCTCCATCTTACCTCACAGGAGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGTCTATCTGCCGATCCTGAGACCTTTGCCAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGGGCTCTAGGATGTGTATTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGTGAGGGTGGCCTAGACTATCTTGGAAACCCAAGTCTTATACATGCACAGAGTATTTTGGCCATTTGGGCATCTCAAGTAGTGCTAATGGGTGCAGTTGAAGGTTACCGTATTGCTGGAGGACCACTCGGAGAAATTACCGATCCCATCTACCCAGGCGGTAGCTTTGATCCCCTCGGACTGGCTGATGATCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAATGGCCGTCTTGCAATGTTTTCCATGTTCGGGTTTTTTGTACAAGCCATTGTAACAGGAAAGGGTCCTTTGGAGAACCTCGCAGATCATCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACCAACTTTGTACCTGGGAAGTGA 798 49.0 MAAMALSSTFTGKAVPLNAPTELSSLVRSNGRVSMRRSGKPAASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 25634840 25635637 - ClCG10G011800.1 Cla10g01121 282780
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01121 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cla10g01121 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2, CHLOROPLASTIC 2 265 - -
Cla10g01121 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cla10g01121 265 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Cla10g01121 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 265 IPR001344 GO:0009765|GO:0016020
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00280 Cla-Chr2:2756166 Cla10g01121 Cla-Chr10:25634840 1.55E-151 dispersed
Cla02g01804 Cla-Chr2:33078485 Cla10g01121 Cla-Chr10:25634840 5.66E-171 dispersed
Cla03g00652 Cla-Chr3:7885643 Cla10g01121 Cla-Chr10:25634840 8.85E-81 dispersed
Cla08g00194 Cla-Chr8:3955913 Cla10g01121 Cla-Chr10:25634840 2.14E-66 dispersed
Cla10g00607 Cla-Chr10:9031527 Cla10g01121 Cla-Chr10:25634840 5.09E-119 dispersed
Cla10g01121 Cla-Chr10:25634840 Cla11g01861 Cla-Chr11:32115231 2.65E-59 dispersed
Cla10g01121 Cla-Chr10:25634840 Cla01g02379 Cla-Chr1:37491657 2.17E-173 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01121 K08912 - csv:101203342 528.865