Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01125 ATGAGCTGCTTTAGCTGCTGCGAGGAAGATGGAATTCAGAAAGCAGCTGACAATGGAGGCATGTATGCAGGAAAGCAAAATACAGGAAACAATGGGGGTTATCAAAAACCCGAAGCTGCACCAGCAGTCACTCAAGCTGTCAAAATGCAACCAATATTAGTGCCTACCATACCTGTCGAAGAACTGTCAGAAGTAACAGACAACTTTGGAAATGATGCTTTGATTGGAGAGGGTTCATATGGGAGAGTATACTATGGGATGCTTAAAAATGGGCAGCCTGCTGCGATCAAGAAGTTAGATGCCAGCAAACAGCCTGATGATGAGTTTTTAGCACAGGTCTCCATGGTCTCAAGGCTGAAGCATGGAAATTTTGTTCAATTGCTTGGTTATTGCGTTGATGGGAGTTCCCGCATACTAGTATACGAGTATGCTTCCAATGGATCACTTCATGATATTCTTCATGGAAGAAAAGGAGTGAAAGGAGCACAACCAGGTCCCGTTCTATCATGGGCACAACGTGTGAAAATTGCTGTAGGGGCTGCTAGAGGACTCGAGTATTTGCATGAAAAGGCTGAGTCCCACATTATCCATCGTGATATTAAGTCCAGCAATGTACTCATCTTTGATGATGATGTTGCTAAAATTGCTGACTTTGATTTGTCCAATCAAGCTCCTGATATGGCAGCACGTCTTCACTCCACCCGTGTTCTTGGAACTTTTGGTTATCATGCTCCTGAATATGCTATGACTGGTCAATTGAACGCCAAAAGTGATGTATATAGCTTCGGCGTAGTCTTGCTTGAACTTTTGACAGGGAGAAAACCTGTAGATCCTACGCTACCACGAGGACAACAAAGTCTAGTTACTTGGGCTACACCAAAGCTGAGTGAAGATAAAGTTAGGCAGTGCGTTGATGCAAGGCTTGGCGGAGACTACCCCCCAAAGGCGGTAGCAAAGTTAGCAGCTGTTGCTGCCTTGTGTGTGCAGTATGAGGCAGATTTCCGGCCAAACATGAGCATTGTTGTCAAAGCCCTCCAGCATCTATTAAATGCCCGACCTGGGCCTTCTGGTGATGCATCAAACTCGTAA 1089 45.18 MSCFSCCEEDGIQKAADNGGMYAGKQNTGNNGGYQKPEAAPAVTQAVKMQPILVPTIPVEELSEVTDNFGNDALIGEGSYGRVYYGMLKNGQPAAIKKLDASKQPDDEFLAQVSMVSRLKHGNFVQLLGYCVDGSSRILVYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAESHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDPTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQHLLNARPGPSGDASNS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25727248 25732754 + ClCG10G011840.1 Cla10g01125 282784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01125 362 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Cla10g01125 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Cla10g01125 362 PIRSF ILK 25 353 - -
Cla10g01125 362 Gene3D Phosphorylase Kinase; domain 1 33 143 - -
Cla10g01125 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 357 - -
Cla10g01125 362 Gene3D Transferase(Phosphotransferase) domain 1 144 354 - -
Cla10g01125 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Cla10g01125 362 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01125 362 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01125 362 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
Cla10g01125 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 357 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla09g00431 Cla10g01125 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01125 Cla-Chr10:25727248 Cla10g01682 Cla-Chr10:32547405 2.22E-162 dispersed
Cla10g01125 Cla-Chr10:25727248 Cla09g00431 Cla-Chr9:4111706 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80857 PF07714 PK_Tyr_Ser-Thr 5.60E-47 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01125 K13436 - csv:101223136 711.449