Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01132 ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCGAATCGTCGGCGGACGGTTAACGCGCCGGATGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGCATCAAGGATGACCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAACCCTCGGCCATTCAGCAGAGAGCTGTGAGACCGATTATTGAGGGTCGAGATGTTATAGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCCCTTACCGTTTGCCAGATGGTTGATACCTCCAGTAGAGAGGTACAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCGACTCAGACAGAGAAGGTTATTTTGGCAATTGGCGACTACATCAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTGGTTCTGGATGAGTCTGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACGAACAAGTTTATGACAGATCCTGTGAGGATTCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTTGTTGCAGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACTCAAGCTGTAATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTTCGATCAGGAACTACCCGTGTCCTAATTACTACTGATGTTTGGGCACGAGGGCTTGATGTTCAGCAGGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACTCAGATTGATGAGATGCCCATGAACGTTGCTGATTTAATTTAA 1233 44.69 MAAAATTSVVPPNRRRTVNAPDDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25806437 25810490 - ClCG10G011910.2 Cla10g01132 282791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01132 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Cla10g01132 410 Gene3D - 27 245 IPR027417 -
Cla10g01132 410 PANTHER BNAC03G41130D PROTEIN 21 403 - -
Cla10g01132 410 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676|GO:0005524
Cla10g01132 410 CDD SF2_C_DEAD 250 380 - -
Cla10g01132 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Cla10g01132 410 SMART helicmild6 290 371 IPR001650 -
Cla10g01132 410 SMART ultradead3 56 253 IPR014001 -
Cla10g01132 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Cla10g01132 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 403 - -
Cla10g01132 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Cla10g01132 410 Gene3D - 246 410 IPR027417 -
Cla10g01132 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Cla10g01132 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00180 Cla-Chr5:1625411 Cla10g01132 Cla-Chr10:25806437 2.98E-89 dispersed
Cla07g01320 Cla-Chr7:30378278 Cla10g01132 Cla-Chr10:25806437 1.07E-179 dispersed
Cla10g01132 Cla-Chr10:25806437 Cla07g01300 Cla-Chr7:30138614 1.70E-69 dispersed
Cla10g01132 Cla-Chr10:25806437 Cla09g00073 Cla-Chr9:688045 1.78E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01132 K13025 - csv:101222664 802.357