Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01155 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAAGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCCAGTGCTGGCATGAAGCATACTCTTGCAAGATACAACAAATGTGTAGAATCTTCAGAGGCTACAGTAGACGTGCACAAGGTCGAGTTTCTTCCTCCCCAGAAGCAAGAGCATGAGGAAGTAGACATTCTAAGAGACGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACTGGCTTAGGCTTCAAAGAGTTGCAGAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGTACAGGTCAGTGAGCTTCGGTGTCTGTTTCCGCCGGTTGATTGTCCGCTGCCTGCTTATCTTGAATACTGCTCCCTAGAGCAGAAGAACATTGGCATTAGAAGCCCTGATATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGAAAAGGGCCCCAACTCTGCTTTTGCAATCTTCTTCCATTGTACTATTGGTTATTGGTTATGTTTTTAAATTGATCCTCCCTGTTGGTCAGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGGAATGGCTGCACAGACACTGATGAGACGAACCGGGGATAATCAGTTTCATCTCCACCTTCAGAAACTGCAAATATTCATTAGGTGA 852 43.66 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSAGMKHTLARYNKCVESSEATVDVHKVEFLPPQKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQVSELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSPDMACNSEIERGDSDTTLHLGKRAPTLLLQSSSIVLLVIGYVFKLILPVGQAAISCLLQEKGGMAAQTLMRRTGDNQFHLHLQKLQIFIR 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26113807 26117897 + ClCG10G012140.2 Cla10g01155 282814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01155 283 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla10g01155 283 ProSiteProfiles K-box domain profile. 91 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla10g01155 283 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla10g01155 283 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla10g01155 283 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla10g01155 283 Gene3D - 14 78 IPR036879 GO:0003677|GO:0046983
Cla10g01155 283 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 219 - -
Cla10g01155 283 PANTHER MADS BOX PROTEIN 1 219 - -
Cla10g01155 283 Pfam K-box region 92 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla10g01155 283 Coils Coil 128 148 - -
Cla10g01155 283 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla10g01155 283 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla10g01155 283 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla10g01155 283 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cla10g01155 283 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00364 Cla-Chr4:13538667 Cla10g01155 Cla-Chr10:26113807 4.44E-49 dispersed
Cla10g01155 Cla-Chr10:26113807 Cla07g01523 Cla-Chr7:32406091 5.61E-39 dispersed
Cla10g01155 Cla-Chr10:26113807 Cla10g00943 Cla-Chr10:22268981 1.80E-40 transposed
Cla10g01155 Cla-Chr10:26113807 Cla06g00019 Cla-Chr6:245023 2.29E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61880 PF01486 K-box 4.00E-15 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01155 - - csv:101218805 353.599