Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g01174 | ATGTGTGGTGGTCCAGAACAGTCCAATTCTGCATCGACTACATCGGCAAACTCACCTAACCCCAAAGACATGAATCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAATGATGCAGAAGGCTTCAAACGTTTGATGGAGTCTGATTTGTATTCTCTTAACAAGTCTGGTCTCTGGTATGTTCGTCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGGACACCCCTGATGGTTGCTGCCACATATGGCTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGGGGTTGATGTTAATCTCTCATCTGGCACAGACAAGAGCACTGCTCTCCACTGTGCTACTTCTGGTGGATCTGTGAATGTGGTTGATATTGTCGATTTGCTTTTATCTGCTGGTGCTGACCCAAACTCCAAGGATGTCAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAAGGTTCAGGCTTGAGGAACTTCTTAACAATCATTCAAATGGATCCATGGATGTGTCCTCTTTACATTTGTCAATCAAAACACCCAATTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATATCTTCTCCCAAATTTACTGATGGATTTGGAAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCGTCACTTCCTGATATCAAGAACAGCATATATGCAACTGATGAGTTTCGGATGTTCTCTTTCAAGGTCAGACCTTGTTCTCGGGCATATTCTCATGATTGGACCGAGTGTCCTTTCGTACACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGGAAGTTTCACTACAGTTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTTTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTTTGCAAGGATGGAACCAGTTGCAATAGGCGGGTCTGCTTCTTTGCTCACACCAACGAAGAACTGAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGGTCAATTGGATCTGCACCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTTCCTGGTTCCCCCTCATCAGTGTCTGCTTTGTCTCCATCTCCATTTACTCAATCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAGCCAAATGTGCCGACTCTTCATTTACCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTCTGAATGCCAGGGATATGCCTTTAGAGGATTTAAATGTCTTGCCAGACTTTGACAACCAGCCACGGATTTTGAATGATTTGAACTGTTTCTCTCAGCCTCGCCCGAGTGCTGTGTCTGTTAGCCGATCTGGTTGGACCCAAACTCTAACTCCTAACAACCTTGAAGAGCTTTTTTCTTCTGAGATCTCTTCGTCTCCCAGATTTTCCGATCCAGCTGCCAATGCCTTTTCCCCTACCCGCAAATCAACTATGCTAAACCAATTCCAGCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAGCATTATGTCCCCTAAGAATGTAGATCATCATTTGTTGCAGGCCTCTTTTGGAGTTTCATCCCCGGGAAGGATGTCGCCTAGAAGCACTGAGCCACTATCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACAACACCTCCGGACTCTCAGTTCAAGGGAGCTGGGATCTAATGTCCCAAGCTCATTGATCGGATCTCCTGTCAGTTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTAGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACTGCGAAGGTCATCTTCTTTCGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAGTGCCCGGGATGGGTGCTGCGGCATCCGGTGAGGGTCTAACTACTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG | 2178 | 45.91 | MCGGPEQSNSASTTSANSPNPKDMNHLTVDCEDSFYSLLELASDNDAEGFKRLMESDLYSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPGVDVNLSSGTDKSTALHCATSGGSVNVVDIVDLLLSAGADPNSKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNNHSNGSMDVSSLHLSIKTPNSESPPLSSSLEDEFPSPPKSISSPKFTDGFGNSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRILNDLNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANAFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQQHLRTLSSRELGSNVPSSLIGSPVSSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAVPGMGAAASGEGLTTTKSQLESTDHSVIGAWLEQMQLDQLVV | 725 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 26344622 | 26346799 | + | ClCG10G012350.1 | Cla10g01174 | 282833 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g01174 | 725 | SMART | ANK_2a | 80 | 110 | IPR002110 | GO:0005515 | |
Cla10g01174 | 725 | SMART | ANK_2a | 115 | 147 | IPR002110 | GO:0005515 | |
Cla10g01174 | 725 | SUPERFAMILY | Ankyrin repeat | 36 | 159 | IPR036770 | - | |
Cla10g01174 | 725 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cla10g01174 | 725 | Pfam | Ankyrin repeats (3 copies) | 70 | 149 | IPR002110 | GO:0005515 | |
Cla10g01174 | 725 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 302 | 322 | IPR000571 | GO:0046872 | |
Cla10g01174 | 725 | PANTHER | UNKEMPT FAMILY MEMBER | 18 | 723 | IPR045234 | - | |
Cla10g01174 | 725 | Gene3D | - | 297 | 360 | - | - | |
Cla10g01174 | 725 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cla10g01174 | 725 | ProSiteProfiles | Zinc finger C3H1-type profile. | 302 | 324 | IPR000571 | GO:0046872 | |
Cla10g01174 | 725 | MobiDBLite | consensus disorder prediction | 194 | 229 | - | - | |
Cla10g01174 | 725 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 | 18 | 723 | - | - | |
Cla10g01174 | 725 | MobiDBLite | consensus disorder prediction | 194 | 241 | - | - | |
Cla10g01174 | 725 | PRINTS | Ankyrin repeat signature | 116 | 131 | IPR002110 | GO:0005515 | |
Cla10g01174 | 725 | PRINTS | Ankyrin repeat signature | 134 | 148 | IPR002110 | GO:0005515 | |
Cla10g01174 | 725 | SMART | c3hfinal6 | 297 | 323 | IPR000571 | GO:0046872 | |
Cla10g01174 | 725 | SMART | c3hfinal6 | 332 | 355 | IPR000571 | GO:0046872 | |
Cla10g01174 | 725 | Gene3D | - | 5 | 206 | IPR036770 | - | |
Cla10g01174 | 725 | ProSiteProfiles | Ankyrin repeat region circular profile. | 115 | 149 | - | - | |
Cla10g01174 | 725 | MobiDBLite | consensus disorder prediction | 401 | 423 | - | - | |
Cla10g01174 | 725 | ProSiteProfiles | Ankyrin repeat profile. | 115 | 150 | IPR002110 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla10g01174 | Cla-Chr10:26344622 | Cla10g01629 | Cla-Chr10:31945774 | 0 | dispersed | |
Cla10g01174 | Cla-Chr10:26344622 | Cla02g01906 | Cla-Chr2:34204310 | 6.65E-159 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61881 | PF12796 | Ank_2 | 1.20E-09 | CL0465 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g01174 | - | - | csv:101205376 | 1314.67 |