Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01180 ATGGCGTTGGCCAGTCGCATCCGATCCACCATCCCTGCCCTCAGTAAGTTTTGGAGATCCGAATCCTCATGCACTCCGGATTTGCTGGAATTTATAATCTGTTCGTTTTCTAGGGGAAAGGGAGATAATTCTGATTATCCGAACTTGTGTTCTGTGCCTATTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTCTGTATCTAGCTGCAGTAAAAGCTAATTCTTTAGAAAAGGTGGAGTCTGAGCTTGTTAACCTTGTTGAGGCTATTAAGAAAAGCCCTACATTTTCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAAACTAGAGTTAAGGCTATCAATGAAATTTCTGCTGAAGCTAAATTTTCAGACACTGTAAAGAACTTTTTGGGTAGGATTGATTACTCTTCTGTGGTTGTGTGGATGAAAACTGACTTTAGCTTTGGCCCCTTTTATGCTGCACAAATTGTCTTTGTGCTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACCATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCAGCACAAGAAGAGAAAGAGTTGAAGGAGACATTGCAAGATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGACATGTCCATTAAAACCCGAGCGCGTCAAATGGAGAGGTTCTTGCGCCAACCTGTAACTCTTGATGGTCTGTGA 807 42.75 MALASRIRSTIPALSKFWRSESSCTPDLLEFIICSFSRGKGDNSDYPNLCSVPIALFGGSGNYASALYLAAVKANSLEKVESELVNLVEAIKKSPTFSQFTMDLSVPAETRVKAINEISAEAKFSDTVKNFLGRIDYSSVVVWMKTDFSFGPFYAAQIVFVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIPIPAQEEKELKETLQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVTLDGL 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26412403 26415592 - ClCG10G012410.1 Cla10g01180 282839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01180 268 PANTHER ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL 46 261 - -
Cla10g01180 268 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 221 240 IPR020781 GO:0015986|GO:0016020|GO:0046933
Cla10g01180 268 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 60 133 IPR026015 -
Cla10g01180 268 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 157 258 IPR000711 GO:0015986|GO:0046933
Cla10g01180 268 Pfam ATP synthase delta (OSCP) subunit 156 257 IPR000711 GO:0015986|GO:0046933
Cla10g01180 268 Pfam ATP synthase delta (OSCP) subunit 61 132 IPR000711 GO:0015986|GO:0046933
Cla10g01180 268 PANTHER ATP SYNTHASE DELTA CHAIN 46 261 IPR000711 GO:0015986|GO:0046933
Cla10g01180 268 Hamap ATP synthase subunit delta [atpD]. 55 261 IPR000711 GO:0015986|GO:0046933
Cla10g01180 268 Gene3D - 60 187 IPR026015 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla09g00383 Cla10g01180 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01180 Cla-Chr10:26412403 Cla09g00383 Cla-Chr9:3740733 2.33E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01180 K02137 - tcc:18614630 306.219