Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01206 ATGAATAAGGGTCTTCAGCTGGTTTCCAAAGGAAATGATCCGCCATTTGTATTTCCTCAAAAACCTCCTTCGTCTTCTTCTTCTTCACACCCAACACCACTTGATTTTTCCCTCTCTTTTTCCTCCATTCTTCAACCTCCTCATGAACATCAAACCCACAATCACAAACACCATAACCACCTCCTTCCCCATTCTCTCAACTCTCCTCCGCCGCCCGCCGCCACTTCTCGCCGATCTTCTCAAACTGAAGGATCAGAAGGAGCAGGTGTTTTTACGGAGGTGATAAGTGGAGCGGCTGCGGCGGCGGATGGCGAGGGAGGAGAATTCGGAAGAGGTAACGGAATAGTTTTGTCAACATACAGAAACAGAAATGAAAGGGAAGAAAAAAGAGAGAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATGAAATTGGGTTGCAGAAAAAAACTGAGGCTTTCAAGACAGCAATCGGCTTTTCTTGAAGAAAGCTTCAAACAACACCATACACTTTACCCTAAGCAAAAGCTAGAAGTTGCAAGAAGACTGAATCTTCTTCCTCGTCAAGTAGAAGTTTGGTTTCAAAATAGACGAGCAAGAACGAAGCTGAAGCAAACAGAAGTAGAGTGTGAATACTTGAAGAAATGTTGCGCAACATTGACCCAACAAAACACAAAGCTTCAAAAGGAACTTCAAGATTTGAGAGCTTTAAAAACCACCCATTCTCTCTTCATGCACTCCCCCGCCACCACTCTCACCTTGTGCGCGTCTTGTGAACGCGCCGCCGCAACCCCCAACTTCCGTTGA 819 44.81 MNKGLQLVSKGNDPPFVFPQKPPSSSSSSHPTPLDFSLSFSSILQPPHEHQTHNHKHHNHLLPHSLNSPPPPAATSRRSSQTEGSEGAGVFTEVISGAAAAADGEGGEFGRGNGIVLSTYRNRNEREEKRENEEEEEEEEEEEEEEMKLGCRKKLRLSRQQSAFLEESFKQHHTLYPKQKLEVARRLNLLPRQVEVWFQNRRARTKLKQTEVECEYLKKCCATLTQQNTKLQKELQDLRALKTTHSLFMHSPATTLTLCASCERAAATPNFR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26697926 26701397 - ClCG10G012670.2 Cla10g01206 282865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01206 272 ProSiteProfiles 'Homeobox' domain profile. 148 208 IPR001356 GO:0003677
Cla10g01206 272 PANTHER - 118 268 - -
Cla10g01206 272 SUPERFAMILY Homeodomain-like 150 217 IPR009057 -
Cla10g01206 272 ProSitePatterns 'Homeobox' domain signature. 183 206 IPR017970 GO:0000981|GO:0006355
Cla10g01206 272 MobiDBLite consensus disorder prediction 71 87 - -
Cla10g01206 272 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 118 268 - -
Cla10g01206 272 Gene3D - 156 206 - -
Cla10g01206 272 SMART halz 208 251 IPR003106 GO:0006355|GO:0043565
Cla10g01206 272 Pfam Homeobox associated leucine zipper 208 242 IPR003106 GO:0006355|GO:0043565
Cla10g01206 272 MobiDBLite consensus disorder prediction 1 87 - -
Cla10g01206 272 MobiDBLite consensus disorder prediction 22 48 - -
Cla10g01206 272 MobiDBLite consensus disorder prediction 131 145 - -
Cla10g01206 272 SMART HOX_1 150 212 IPR001356 GO:0003677
Cla10g01206 272 Pfam Homeodomain 152 206 IPR001356 GO:0003677
Cla10g01206 272 CDD homeodomain 152 209 IPR001356 GO:0003677
Cla10g01206 272 MobiDBLite consensus disorder prediction 123 145 - -
Cla10g01206 272 Coils Coil 221 241 - -
Cla10g01206 272 Coils Coil 117 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00795 Cla-Chr10:17043236 Cla10g01206 Cla-Chr10:26697926 2.60E-51 dispersed
Cla10g01206 Cla-Chr10:26697926 Cla10g01677 Cla-Chr10:32506524 3.36E-56 dispersed
Cla10g01206 Cla-Chr10:26697926 Cla09g00345 Cla-Chr9:3389307 2.24E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61884 PF00046 Homeodomain 1.00E-13 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01206 K09338 - csv:101208907 272.322