Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01223 ATGGAGAAGAAGACTTATCCGATTGGTGAAGATTATTATATTCTGTATGAGGAGGTCGGGCAGGGTGTGAGCGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTTAACGAGATCGTCGCCATTAAGATTCTCGATTTTGAGCGTGAGAATTGTGATCTGGCTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCCAATGTCCTTAAATCACACTGCTCTTTTGTCAATGGCCATGATTTGTGGATTGTTATGCCCTACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTCATAGCAACAGTTTTGCGAGAAGTATTGAAGGGGGTTGAATATCTTCATAATCATGGACATATACATCGGGATATCAAAGAGCTGAATCTGATTGGTTCATTATTTGATCCCCCATTTGTGAAGCCTAACTTCATTGTATTCTATGAAATAAGGAATATTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCGGCTTGTCTTTTTGATTCAGGTGATCGACAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAACGCACCTCCAGGGCTTGATTATGAGAGGGATAAAAAATTCTCAAAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGGCCTTCTGCAAGTAAGCTGCTAAAGCATTCATTTTTTAGGCAAGCCCGATCAAATGATTACATTGCACGCACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTCAAGAGAAAAGAAGAAGATATGCTAGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAATGAATATAAACGAGGCATCAGTGGATGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAGTCAATAAGTGAAATCAGTGAAGTAGGGAGCTCAAATTCCTTATGTGCACTTGATGTGCAAGAAAAGAAATTACAAGGCCAAAATTCTTCAGAAATTTCAGATAATGAAGAGAATGGCATGCTGCGGAGACAACCCTCCATGAAAGCAAATGACACAGTAGAGGGTAAAAATTCTATCAATGAATCAACAATTATTGGTTCTTCCTCTCAACATTATTCTTCACCCATTGAGAATGGCTCCAGTGAGGAGTTTCGTTTGGAGAGCAGCAAAAGAATTTTGGGGAATACTCCTAATTCTAGCCAACATAAAAGAAGTATTTCTTCTAATACCGCTATTCAACAAGAAATCAGTTCACCACTGAACAGAAGAGAGAGTTATGAGACAGAAAAGAATGGTGCAAATGGCAGTATTGCAATTGGAATGACTTCTCAGGCGGTAGATGATGTACTTTCTGATTCTCATTCTAAAGATCCCAAGTCATCATTAAGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACCTCGGAGAGTGTTGATGTAGAAAAGGCAGCTGCATCCCCTATTTTGCAAAAAAGTCACAGCATGCAGGTTGGTAATTCTGAGGTGATTACCTCAAATTCTGCTACTCCTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCTTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCGCAATCGGAGAATTTTCAGCTGATGGCGTAGTTGATGTCTCAGTGGCCCATATAACAGCAACGGAAAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTTAACGAAGTAACTGAGTTACAGTGGAGGAAGAAGAAATGTAAGGCAGTAAAGGATGATATGATGAGAGAAGAAGGTAACCTTACAGGTCATTTCCACTGTAGTATTGTTCTTCGGCTTGATATGGTTTTCTTCAAAGCTGTGTTCCTTCTCCTGTTTCAGTATCTGGTTTTGAATTCTGGGACTCCAGTTATTATAGGTCACCACTACCCTCCTCATAAGTCCTTGCTCACTGATAAAGCAGCCCTCCTTGCCTTCAGGAAGTGCATCATACACGACCCCACTTCCACTCTAGCTAACTGGATTGAGGCTATTGATGTATGCAACTTCACTGGTGTTGCTTGTGACCGACACCGTCATCGGGTATCAAAGCTCAGCTTGATTGATGTTGGACTTGTGGGAAAGATTCCACCCTTCCTCTCCAATCTCACGGGTCTTCGAATTCTGGATATTGTTAACAGTTATCTTTTTGGGGAAATTCCTTCTGAACTTTTTTCTCTTCGAAATCTTCACCGCCTTCGCCTCGACAGCAACAGTTTGGAAGGTCCCATACCAACTTCCCTTGCTAGTTTGTCCAGGCTTACTGTAATAAGTCTTAGGGAGAACAGGCTAAATGGAACAGTTCCACCTTCTCTTTTTTCTAATTGCACGTCGTTGCTTAATGTAGACCTTTCCAACAACTTCTTAACAGGAAGAATTCCAGAAGAAATTGGAAATTGTCCAAAGCTGTGGAATCTCAATCTGTACAACAACCAGTTCAGTGGAGATCTTCCTCTTTCTTTAAGAAACACTTCGCTCTATAACTTGGATGTCGAATATAATCATCTTTCTGGCGAACTGCCTGCAGTGCTTGTAGAAAACCTGCCTTCACTTAGCTTCCTTCATTTATCAAATAATGATATGGTAAGCCACGATGGAAATACCAATCTTGAACCGTTCATTACTTCTCTTAGAAACTGCAGTAGTTTAGAGGAGCTTGAATTGGCTGGGATGGGGCTTGGAGGGAGGCTGCCCAGTTCTATTGGTCATCTGGGTGTCAATTTCTCAGTTCTGTCTTTGCAGGAAAACCAGATATTTGGATCAATTCCTCCAAATTTAGCCAAGCTTTCCAAACTTGCAGGGCTGAATTTGACATCAAATCTACTAAACGGAACAATTCCTGCAGAGATAAGCAGGTTGTCAAAATTGGAGCAGCTTTTCTTATCACACAACCTCTTCACTTCAGACATTCCAGAAGCATTAGGCGAGTTGCCACATCTTGGATTGTTGGATCTATCTCACAACCAACTTTCAGGAGAAATCCCAGAAAGTATTGGAAATTTAACTCAGATGATTTATTTGTTTCTCAACCACAACCTCTTGTCTGGAACAATACCTTTAGCGTTGGTAAAGTGCACAGGTCTACAAAAGCTGGACTTATCTTTCAACATGTTATCTGGAAGTATTCCTCGAGAGATCTTAGGCTTGCAAGAGATAAGAATTTTTATCAACCTTTCTCATAACAATTTTCAAGGAAACCTGCCCATTGAGCTTAGCAAGCTGAAAAATGTTCAAGAGATGGACCTTTCATCCAATAACCTCACTGGAAGCATCTTCCCTCAGATATCAAGTTGCATTGCACTGAGGTTACTAAATTTTTCAACTAATTCCCTCCAAGGTCATCTTCCAGATTCTCTAGGTGAACTCGAGAACCTTGAATCATTTGACATTTCAAAAAACCAATTGTCAGGCATGATTCCAGCCAGTCTAGGTAAGCTCCAATCTCTCAGTTACCTGAATCTTTCATTCAATAACTTCCAAGGAATGATTCCAAGAGAGGGATTTTTCAAATCATCCACACCTCTCTCATTTTTGAACAATCCACTCCTTTGTGGGACAATTCCTGGAATGCCAGCCTGTTCTGGCAAGAGAAATCGGTTTCAATCACCTGTATTCTTGACTATATTCATTTTAATCATATGCATATCATCTTTCTTATCAACAATATGCTGTGGGATTGCTTGTCAACGTCTAAAAGCAATTGTTTCAGCACGAAATAGTGAGTCATCAAGGAGATCAAAGATGCCAGATTTTATGCACAATTTTCCAAGAATAACAAGCAGGCAACTATCAGAGGCCACTGGAGGTTTTGATGAACGGAGACTAATTGGTTCAGGCAGCTATGGACAAGTCTATAAAGGCGTTCTTCCAGATGGAACAACTGTAGCTGTTAAGGTTTTGCATACACAATCTGGAAACTCCACAAAGAGTTTTAACAGAGAATGCGAAGTTTTGAAGCGAATTCGCCACAGAAACCTTATAAGAATTATAACAGCTTGTAGTCTTCCGGATTTTAAAGCTCTAGTTCTACCATATATGGCAAATGGAAGCTTGGATAACCATCTATATCGATGTTCACCTACCAGCTCGGCTTCGGGTTCTTCAGATTTAAACCTTATTGAGAGGGTGAATATATGCAGTGATATAGCTGAAGGAATGGCATACCTGCATCATCATTCTCCAGTCAGAGTCATACACTGTGATTTAAAGCCAAGTAATGTACTTCTAAAGGATGACATGACAGCCCTTGTTTCTGACTTTGGGATCTCAAGGCTAATGACCCCTGGAATTGGAAGCGCAACTGTTGAAAACATGGGAAAGTCAACTGCAAACATGTTAACTGGATCAATTGGATATATTGCACCAGAGTACGGATTTGGTTCTACAGCCTCCATGAAAGGAGACGTTTACAGCTTCGGCGTGCTAGTTCTAGAGATGGTAACAAGAAAAAGGCCAATAGACGACATGTTTGTTGAAGGGCTAAGTTTACATAAGTGGGTGAAGAGTCATTACTACGGCAGAGTAGAAAAAGTAGTGGATTATTCTCTACAGAGAGCTTCGAGAGATGAATCACCTGAAATGAAGAAAATGTGGGAAGTGGCAATCCGAGAGCTAATCGAATTAGGTTTGCTCTGCACTCAAGAATCTCCATCCACAAGACCAACAATGCTGGATGCTGCTGATGACTTGGATCGATTGAAGAGATACCTTAATGGTGGCGACACCACAACAACATTTGCTTCATCACTTGGAATTTCGTCCTCCACTCTTGGCGATGACTCCAATTACTCCCCACAAATCGCCGTTGACAGAAACATCTAG 5196 41.03 MEKKTYPIGEDYYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLASIYREVQTMILVDHPNVLKSHCSFVNGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATVLREVLKGVEYLHNHGHIHRDIKELNLIGSLFDPPFVKPNFIVFYEIRNILIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKMIASCLVKDPSKRPSASKLLKHSFFRQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSNSLCALDVQEKKLQGQNSSEISDNEENGMLRRQPSMKANDTVEGKNSINESTIIGSSSQHYSSPIENGSSEEFRLESSKRILGNTPNSSQHKRSISSNTAIQQEISSPLNRRESYETEKNGANGSIAIGMTSQAVDDVLSDSHSKDPKSSLSPATNDEEQDEKAKAPVIQQKGRFKVTSESVDVEKAAASPILQKSHSMQVGNSEVITSNSATPLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQIAIGEFSADGVVDVSVAHITATEKSLLEAAHEREKDLLNEVTELQWRKKKCKAVKDDMMREEGNLTGHFHCSIVLRLDMVFFKAVFLLLFQYLVLNSGTPVIIGHHYPPHKSLLTDKAALLAFRKCIIHDPTSTLANWIEAIDVCNFTGVACDRHRHRVSKLSLIDVGLVGKIPPFLSNLTGLRILDIVNSYLFGEIPSELFSLRNLHRLRLDSNSLEGPIPTSLASLSRLTVISLRENRLNGTVPPSLFSNCTSLLNVDLSNNFLTGRIPEEIGNCPKLWNLNLYNNQFSGDLPLSLRNTSLYNLDVEYNHLSGELPAVLVENLPSLSFLHLSNNDMVSHDGNTNLEPFITSLRNCSSLEELELAGMGLGGRLPSSIGHLGVNFSVLSLQENQIFGSIPPNLAKLSKLAGLNLTSNLLNGTIPAEISRLSKLEQLFLSHNLFTSDIPEALGELPHLGLLDLSHNQLSGEIPESIGNLTQMIYLFLNHNLLSGTIPLALVKCTGLQKLDLSFNMLSGSIPREILGLQEIRIFINLSHNNFQGNLPIELSKLKNVQEMDLSSNNLTGSIFPQISSCIALRLLNFSTNSLQGHLPDSLGELENLESFDISKNQLSGMIPASLGKLQSLSYLNLSFNNFQGMIPREGFFKSSTPLSFLNNPLLCGTIPGMPACSGKRNRFQSPVFLTIFILIICISSFLSTICCGIACQRLKAIVSARNSESSRRSKMPDFMHNFPRITSRQLSEATGGFDERRLIGSGSYGQVYKGVLPDGTTVAVKVLHTQSGNSTKSFNRECEVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDNHLYRCSPTSSASGSSDLNLIERVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLKDDMTALVSDFGISRLMTPGIGSATVENMGKSTANMLTGSIGYIAPEYGFGSTASMKGDVYSFGVLVLEMVTRKRPIDDMFVEGLSLHKWVKSHYYGRVEKVVDYSLQRASRDESPEMKKMWEVAIRELIELGLLCTQESPSTRPTMLDAADDLDRLKRYLNGGDTTTTFASSLGISSSTLGDDSNYSPQIAVDRNI 1731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26876990 26895646 + ClCG10G012850.2 Cla10g01223 282882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01223 1731 SMART LRR_typ_2 1078 1101 IPR003591 -
Cla10g01223 1731 SMART LRR_typ_2 876 900 IPR003591 -
Cla10g01223 1731 SMART LRR_typ_2 1271 1295 IPR003591 -
Cla10g01223 1731 SMART LRR_typ_2 1102 1126 IPR003591 -
Cla10g01223 1731 SMART LRR_typ_2 1150 1174 IPR003591 -
Cla10g01223 1731 SMART LRR_typ_2 1247 1270 IPR003591 -
Cla10g01223 1731 SMART LRR_typ_2 1199 1223 IPR003591 -
Cla10g01223 1731 Pfam Protein kinase domain 1396 1684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 Pfam Protein kinase domain 163 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 Pfam Protein kinase domain 15 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 ProSitePatterns Protein kinases ATP-binding region signature. 1401 1423 IPR017441 GO:0005524
Cla10g01223 1731 Gene3D Transferase(Phosphotransferase) domain 1 101 308 - -
Cla10g01223 1731 ProSiteProfiles Protein kinase domain profile. 1395 1695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 Gene3D Ribonuclease Inhibitor 951 1326 IPR032675 -
Cla10g01223 1731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1522 1534 IPR008271 GO:0004672|GO:0006468
Cla10g01223 1731 CDD STKc_IRAK 1401 1691 - -
Cla10g01223 1731 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Cla10g01223 1731 CDD STKc_OSR1_SPAK 11 293 - -
Cla10g01223 1731 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Cla10g01223 1731 MobiDBLite consensus disorder prediction 396 549 - -
Cla10g01223 1731 MobiDBLite consensus disorder prediction 422 454 - -
Cla10g01223 1731 MobiDBLite consensus disorder prediction 463 493 - -
Cla10g01223 1731 SMART serkin_6 1395 1695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 SMART serkin_6 13 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 Pfam Leucine rich repeat 877 938 IPR001611 GO:0005515
Cla10g01223 1731 Pfam Leucine rich repeat 1056 1115 IPR001611 GO:0005515
Cla10g01223 1731 PANTHER OS04G0122200 PROTEIN 752 1698 - -
Cla10g01223 1731 SUPERFAMILY Protein kinase-like (PK-like) 1370 1688 IPR011009 -
Cla10g01223 1731 SUPERFAMILY L domain-like 763 1029 - -
Cla10g01223 1731 Gene3D Transferase(Phosphotransferase) domain 1 1471 1702 - -
Cla10g01223 1731 Coils Coil 675 695 - -
Cla10g01223 1731 Gene3D Phosphorylase Kinase; domain 1 1356 1470 - -
Cla10g01223 1731 Pfam Leucine rich repeat N-terminal domain 763 801 IPR013210 -
Cla10g01223 1731 Gene3D Ribonuclease Inhibitor 877 950 IPR032675 -
Cla10g01223 1731 Gene3D Ribonuclease Inhibitor 763 876 IPR032675 -
Cla10g01223 1731 PANTHER OS06G0186100 PROTEIN 752 1698 - -
Cla10g01223 1731 SUPERFAMILY L domain-like 1056 1310 - -
Cla10g01223 1731 SUPERFAMILY Protein kinase-like (PK-like) 11 294 IPR011009 -
Cla10g01223 1731 ProSiteProfiles Protein kinase domain profile. 13 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 MobiDBLite consensus disorder prediction 502 521 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00470 Cla-Chr5:4284570 Cla10g01223 Cla-Chr10:26876990 5.67E-10 dispersed
Cla06g01253 Cla-Chr6:25754158 Cla10g01223 Cla-Chr10:26876990 0 dispersed
Cla06g01254 Cla-Chr6:25771763 Cla10g01223 Cla-Chr10:26876990 9.28E-07 dispersed
Cla09g01858 Cla-Chr9:36281233 Cla10g01223 Cla-Chr10:26876990 1.47E-13 dispersed
Cla10g00086 Cla-Chr10:867478 Cla10g01223 Cla-Chr10:26876990 1.71E-128 dispersed
Cla10g01223 Cla-Chr10:26876990 Cla10g02084 Cla-Chr10:36524762 6.46E-07 dispersed
Cla11g01746 Cla-Chr11:31039965 Cla10g01223 Cla-Chr10:26876990 8.91E-13 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80861 PF00069 Pkinase 1.70E-41 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01223 - - csv:101211325 1885.92