Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01223 ATGGAGAAGAAGACTTATCCGATTGGTGAAGATTATTATATTCTGTATGAGGAGGTCGGGCAGGGTGTGAGCGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTTAACGAGATCGTCGCCATTAAGATTCTCGATTTTGAGCGTGAGAATTGTGATCTGGCTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCCAATGTCCTTAAATCACACTGCTCTTTTGTCAATGGCCATGATTTGTGGATTGTTATGCCCTACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTCATAGCAACAGTTTTGCGAGAAGTATTGAAGGGGGTTGAATATCTTCATAATCATGGACATATACATCGGGATATCAAAGAGCTGAATCTGATTGGTTCATTATTTGATCCCCCATTTGTGAAGCCTAACTTCATTGTATTCTATGAAATAAGGAATATTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCGGCTTGTCTTTTTGATTCAGGTGATCGACAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAACGCACCTCCAGGGCTTGATTATGAGAGGGATAAAAAATTCTCAAAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGGCCTTCTGCAAGTAAGCTGCTAAAGCATTCATTTTTTAGGCAAGCCCGATCAAATGATTACATTGCACGCACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTCAAGAGAAAAGAAGAAGATATGCTAGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAATGAATATAAACGAGGCATCAGTGGATGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAGTCAATAAGTGAAATCAGTGAAGTAGGGAGCTCAAATTCCTTATGTGCACTTGATGTGCAAGAAAAGAAATTACAAGGCCAAAATTCTTCAGAAATTTCAGATAATGAAGAGAATGGCATGCTGCGGAGACAACCCTCCATGAAAGCAAATGACACAGTAGAGGGTAAAAATTCTATCAATGAATCAACAATTATTGGTTCTTCCTCTCAACATTATTCTTCACCCATTGAGAATGGCTCCAGTGAGGAGTTTCGTTTGGAGAGCAGCAAAAGAATTTTGGGGAATACTCCTAATTCTAGCCAACATAAAAGAAGTATTTCTTCTAATACCGCTATTCAACAAGAAATCAGTTCACCACTGAACAGAAGAGAGAGTTATGAGACAGAAAAGAATGGTGCAAATGGCAGTATTGCAATTGGAATGACTTCTCAGGCGGTAGATGATGTACTTTCTGATTCTCATTCTAAAGATCCCAAGTCATCATTAAGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACCTCGGAGAGTGTTGATGTAGAAAAGGCAGCTGCATCCCCTATTTTGCAAAAAAGTCACAGCATGCAGGTTGGTAATTCTGAGGTGATTACCTCAAATTCTGCTACTCCTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCTTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCGCAATCGGAGAATTTTCAGCTGATGGCGTAGTTGATGTCTCAGTGGCCCATATAACAGCAACGGAAAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTTAACGAAGTAACTGAGTTACAGTGGAGGAAGAAGAAATGTAAGGCAGTAAAGGATGATATGATGAGAGAAGAAGGTAACCTTACAGGTCATTTCCACTGTAGTATTGTTCTTCGGCTTGATATGGTTTTCTTCAAAGCTGTGTTCCTTCTCCTGTTTCAGTATCTGGTTTTGAATTCTGGGACTCCAGTTATTATAGGTCACCACTACCCTCCTCATAAGTCCTTGCTCACTGATAAAGCAGCCCTCCTTGCCTTCAGGAAGTGCATCATACACGACCCCACTTCCACTCTAGCTAACTGGATTGAGGCTATTGATGTATGCAACTTCACTGGTGTTGCTTGTGACCGACACCGTCATCGGGTATCAAAGCTCAGCTTGATTGATGTTGGACTTGTGGGAAAGATTCCACCCTTCCTCTCCAATCTCACGGGTCTTCGAATTCTGGATATTGTTAACAGTTATCTTTTTGGGGAAATTCCTTCTGAACTTTTTTCTCTTCGAAATCTTCACCGCCTTCGCCTCGACAGCAACAGTTTGGAAGGTCCCATACCAACTTCCCTTGCTAGTTTGTCCAGGCTTACTGTAATAAGTCTTAGGGAGAACAGGCTAAATGGAACAGTTCCACCTTCTCTTTTTTCTAATTGCACGTCGTTGCTTAATGTAGACCTTTCCAACAACTTCTTAACAGGAAGAATTCCAGAAGAAATTGGAAATTGTCCAAAGCTGTGGAATCTCAATCTGTACAACAACCAGTTCAGTGGAGATCTTCCTCTTTCTTTAAGAAACACTTCGCTCTATAACTTGGATGTCGAATATAATCATCTTTCTGGCGAACTGCCTGCAGTGCTTGTAGAAAACCTGCCTTCACTTAGCTTCCTTCATTTATCAAATAATGATATGGTAAGCCACGATGGAAATACCAATCTTGAACCGTTCATTACTTCTCTTAGAAACTGCAGTAGTTTAGAGGAGCTTGAATTGGCTGGGATGGGGCTTGGAGGGAGGCTGCCCAGTTCTATTGGTCATCTGGGTGTCAATTTCTCAGTTCTGTCTTTGCAGGAAAACCAGATATTTGGATCAATTCCTCCAAATTTAGCCAAGCTTTCCAAACTTGCAGGGCTGAATTTGACATCAAATCTACTAAACGGAACAATTCCTGCAGAGATAAGCAGGTTGTCAAAATTGGAGCAGCTTTTCTTATCACACAACCTCTTCACTTCAGACATTCCAGAAGCATTAGGCGAGTTGCCACATCTTGGATTGTTGGATCTATCTCACAACCAACTTTCAGGAGAAATCCCAGAAAGTATTGGAAATTTAACTCAGATGATTTATTTGTTTCTCAACCACAACCTCTTGTCTGGAACAATACCTTTAGCGTTGGTAAAGTGCACAGGTCTACAAAAGCTGGACTTATCTTTCAACATGTTATCTGGAAGTATTCCTCGAGAGATCTTAGGCTTGCAAGAGATAAGAATTTTTATCAACCTTTCTCATAACAATTTTCAAGGAAACCTGCCCATTGAGCTTAGCAAGCTGAAAAATGTTCAAGAGATGGACCTTTCATCCAATAACCTCACTGGAAGCATCTTCCCTCAGATATCAAGTTGCATTGCACTGAGGTTACTAAATTTTTCAACTAATTCCCTCCAAGGTCATCTTCCAGATTCTCTAGGTGAACTCGAGAACCTTGAATCATTTGACATTTCAAAAAACCAATTGTCAGGCATGATTCCAGCCAGTCTAGGTAAGCTCCAATCTCTCAGTTACCTGAATCTTTCATTCAATAACTTCCAAGGAATGATTCCAAGAGAGGGATTTTTCAAATCATCCACACCTCTCTCATTTTTGAACAATCCACTCCTTTGTGGGACAATTCCTGGAATGCCAGCCTGTTCTGGCAAGAGAAATCGGTTTCAATCACCTGTATTCTTGACTATATTCATTTTAATCATATGCATATCATCTTTCTTATCAACAATATGCTGTGGGATTGCTTGTCAACGTCTAAAAGCAATTGTTTCAGCACGAAATAGTGAGTCATCAAGGAGATCAAAGATGCCAGATTTTATGCACAATTTTCCAAGAATAACAAGCAGGCAACTATCAGAGGCCACTGGAGGTTTTGATGAACGGAGACTAATTGGTTCAGGCAGCTATGGACAAGTCTATAAAGGCGTTCTTCCAGATGGAACAACTGTAGCTGTTAAGGTTTTGCATACACAATCTGGAAACTCCACAAAGAGTTTTAACAGAGAATGCGAAGTTTTGAAGCGAATTCGCCACAGAAACCTTATAAGAATTATAACAGCTTGTAGTCTTCCGGATTTTAAAGCTCTAGTTCTACCATATATGGCAAATGGAAGCTTGGATAACCATCTATATCGATGTTCACCTACCAGCTCGGCTTCGGGTTCTTCAGATTTAAACCTTATTGAGAGGGTGAATATATGCAGTGATATAGCTGAAGGAATGGCATACCTGCATCATCATTCTCCAGTCAGAGTCATACACTGTGATTTAAAGCCAAGTAATGTACTTCTAAAGGATGACATGACAGCCCTTGTTTCTGACTTTGGGATCTCAAGGCTAATGACCCCTGGAATTGGAAGCGCAACTGTTGAAAACATGGGAAAGTCAACTGCAAACATGTTAACTGGATCAATTGGATATATTGCACCAGAGTACGGATTTGGTTCTACAGCCTCCATGAAAGGAGACGTTTACAGCTTCGGCGTGCTAGTTCTAGAGATGGTAACAAGAAAAAGGCCAATAGACGACATGTTTGTTGAAGGGCTAAGTTTACATAAGTGGGTGAAGAGTCATTACTACGGCAGAGTAGAAAAAGTAGTGGATTATTCTCTACAGAGAGCTTCGAGAGATGAATCACCTGAAATGAAGAAAATGTGGGAAGTGGCAATCCGAGAGCTAATCGAATTAGGTTTGCTCTGCACTCAAGAATCTCCATCCACAAGACCAACAATGCTGGATGCTGCTGATGACTTGGATCGATTGAAGAGATACCTTAATGGTGGCGACACCACAACAACATTTGCTTCATCACTTGGAATTTCGTCCTCCACTCTTGGCGATGACTCCAATTACTCCCCACAAATCGCCGTTGACAGAAACATCTAG 5196 41.03 MEKKTYPIGEDYYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLASIYREVQTMILVDHPNVLKSHCSFVNGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATVLREVLKGVEYLHNHGHIHRDIKELNLIGSLFDPPFVKPNFIVFYEIRNILIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKMIASCLVKDPSKRPSASKLLKHSFFRQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSNSLCALDVQEKKLQGQNSSEISDNEENGMLRRQPSMKANDTVEGKNSINESTIIGSSSQHYSSPIENGSSEEFRLESSKRILGNTPNSSQHKRSISSNTAIQQEISSPLNRRESYETEKNGANGSIAIGMTSQAVDDVLSDSHSKDPKSSLSPATNDEEQDEKAKAPVIQQKGRFKVTSESVDVEKAAASPILQKSHSMQVGNSEVITSNSATPLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQIAIGEFSADGVVDVSVAHITATEKSLLEAAHEREKDLLNEVTELQWRKKKCKAVKDDMMREEGNLTGHFHCSIVLRLDMVFFKAVFLLLFQYLVLNSGTPVIIGHHYPPHKSLLTDKAALLAFRKCIIHDPTSTLANWIEAIDVCNFTGVACDRHRHRVSKLSLIDVGLVGKIPPFLSNLTGLRILDIVNSYLFGEIPSELFSLRNLHRLRLDSNSLEGPIPTSLASLSRLTVISLRENRLNGTVPPSLFSNCTSLLNVDLSNNFLTGRIPEEIGNCPKLWNLNLYNNQFSGDLPLSLRNTSLYNLDVEYNHLSGELPAVLVENLPSLSFLHLSNNDMVSHDGNTNLEPFITSLRNCSSLEELELAGMGLGGRLPSSIGHLGVNFSVLSLQENQIFGSIPPNLAKLSKLAGLNLTSNLLNGTIPAEISRLSKLEQLFLSHNLFTSDIPEALGELPHLGLLDLSHNQLSGEIPESIGNLTQMIYLFLNHNLLSGTIPLALVKCTGLQKLDLSFNMLSGSIPREILGLQEIRIFINLSHNNFQGNLPIELSKLKNVQEMDLSSNNLTGSIFPQISSCIALRLLNFSTNSLQGHLPDSLGELENLESFDISKNQLSGMIPASLGKLQSLSYLNLSFNNFQGMIPREGFFKSSTPLSFLNNPLLCGTIPGMPACSGKRNRFQSPVFLTIFILIICISSFLSTICCGIACQRLKAIVSARNSESSRRSKMPDFMHNFPRITSRQLSEATGGFDERRLIGSGSYGQVYKGVLPDGTTVAVKVLHTQSGNSTKSFNRECEVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDNHLYRCSPTSSASGSSDLNLIERVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLKDDMTALVSDFGISRLMTPGIGSATVENMGKSTANMLTGSIGYIAPEYGFGSTASMKGDVYSFGVLVLEMVTRKRPIDDMFVEGLSLHKWVKSHYYGRVEKVVDYSLQRASRDESPEMKKMWEVAIRELIELGLLCTQESPSTRPTMLDAADDLDRLKRYLNGGDTTTTFASSLGISSSTLGDDSNYSPQIAVDRNI 1731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26876990 26895646 + ClCG10G012850.2 Cla10g01223 282882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01223 1731 SMART LRR_typ_2 1078 1101 IPR003591 -
Cla10g01223 1731 SMART LRR_typ_2 876 900 IPR003591 -
Cla10g01223 1731 SMART LRR_typ_2 1271 1295 IPR003591 -
Cla10g01223 1731 SMART LRR_typ_2 1102 1126 IPR003591 -
Cla10g01223 1731 SMART LRR_typ_2 1150 1174 IPR003591 -
Cla10g01223 1731 SMART LRR_typ_2 1247 1270 IPR003591 -
Cla10g01223 1731 SMART LRR_typ_2 1199 1223 IPR003591 -
Cla10g01223 1731 Pfam Protein kinase domain 1396 1684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 Pfam Protein kinase domain 163 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 Pfam Protein kinase domain 15 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 ProSitePatterns Protein kinases ATP-binding region signature. 1401 1423 IPR017441 GO:0005524
Cla10g01223 1731 Gene3D Transferase(Phosphotransferase) domain 1 101 308 - -
Cla10g01223 1731 ProSiteProfiles Protein kinase domain profile. 1395 1695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 Gene3D Ribonuclease Inhibitor 951 1326 IPR032675 -
Cla10g01223 1731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1522 1534 IPR008271 GO:0004672|GO:0006468
Cla10g01223 1731 CDD STKc_IRAK 1401 1691 - -
Cla10g01223 1731 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Cla10g01223 1731 CDD STKc_OSR1_SPAK 11 293 - -
Cla10g01223 1731 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Cla10g01223 1731 MobiDBLite consensus disorder prediction 396 549 - -
Cla10g01223 1731 MobiDBLite consensus disorder prediction 422 454 - -
Cla10g01223 1731 MobiDBLite consensus disorder prediction 463 493 - -
Cla10g01223 1731 SMART serkin_6 1395 1695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 SMART serkin_6 13 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 Pfam Leucine rich repeat 877 938 IPR001611 GO:0005515
Cla10g01223 1731 Pfam Leucine rich repeat 1056 1115 IPR001611 GO:0005515
Cla10g01223 1731 PANTHER OS04G0122200 PROTEIN 752 1698 - -
Cla10g01223 1731 SUPERFAMILY Protein kinase-like (PK-like) 1370 1688 IPR011009 -
Cla10g01223 1731 SUPERFAMILY L domain-like 763 1029 - -
Cla10g01223 1731 Gene3D Transferase(Phosphotransferase) domain 1 1471 1702 - -
Cla10g01223 1731 Coils Coil 675 695 - -
Cla10g01223 1731 Gene3D Phosphorylase Kinase; domain 1 1356 1470 - -
Cla10g01223 1731 Pfam Leucine rich repeat N-terminal domain 763 801 IPR013210 -
Cla10g01223 1731 Gene3D Ribonuclease Inhibitor 877 950 IPR032675 -
Cla10g01223 1731 Gene3D Ribonuclease Inhibitor 763 876 IPR032675 -
Cla10g01223 1731 PANTHER OS06G0186100 PROTEIN 752 1698 - -
Cla10g01223 1731 SUPERFAMILY L domain-like 1056 1310 - -
Cla10g01223 1731 SUPERFAMILY Protein kinase-like (PK-like) 11 294 IPR011009 -
Cla10g01223 1731 ProSiteProfiles Protein kinase domain profile. 13 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01223 1731 MobiDBLite consensus disorder prediction 502 521 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01223 - - - csv:101211325 1885.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00470 Cla-Chr5:4284570 Cla10g01223 Cla-Chr10:26876990 5.67E-10 dispersed
Cla06g01253 Cla-Chr6:25754158 Cla10g01223 Cla-Chr10:26876990 0 dispersed
Cla06g01254 Cla-Chr6:25771763 Cla10g01223 Cla-Chr10:26876990 9.28E-07 dispersed
Cla09g01858 Cla-Chr9:36281233 Cla10g01223 Cla-Chr10:26876990 1.47E-13 dispersed
Cla10g00086 Cla-Chr10:867478 Cla10g01223 Cla-Chr10:26876990 1.71E-128 dispersed
Cla10g01223 Cla-Chr10:26876990 Cla10g02084 Cla-Chr10:36524762 6.46E-07 dispersed
Cla11g01746 Cla-Chr11:31039965 Cla10g01223 Cla-Chr10:26876990 8.91E-13 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla11g01746 . 1 766 MAP Kinase Kinase Kinase Kinase AT1G53165 53.6 7.7e-200 694.1
Cla11g01134 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 7.8e-67 252.3
Cla07g00676 . 318 570 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.5e-65 247.3
Cla11g01746 . 1 763 MAP Kinase Kinase Kinase Kinase AT3G15220 55.5 4.7e-205 711.4
Cla11g01134 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 3.5e-67 253.4
Cla07g00676 . 318 570 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.5e-65 248.1
Cla11g01134 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 1.3e-241 833.2
Cla07g00676 . 52 570 MAP Kinase Kinase Kinase Kinase AT1G69220 61.1 1.4e-152 537.3
Cla07g00673 . 552 852 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 1.2e-71 268.5
Cla09g01858 . 1 670 MAP Kinase Kinase Kinase Kinase AT5G14720 65.8 1.8e-249 859.0
Cla05g00470 CCT 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.6e-96 350.9
Cla10g00086 . 594 1269 MAP Kinase Kinase Kinase Kinase AT4G24100 62.5 5.1e-226 781.2
Cla10g00086 . 598 1269 MAP Kinase Kinase Kinase Kinase AT4G10730 62.1 1.6e-224 776.2
Cla10g00086 . 592 924 MAP Kinase Kinase Kinase Kinase AT1G70430 52.6 1.6e-100 364.0
Cla10g01223 . 1 695 MAP Kinase Kinase Kinase Kinase AT1G79640 56.6 2.6e-205 712.2
Cla09g01858 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.8e-103 372.9
Cla05g00470 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.6 2.1e-143 506.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80861 PF00069 Pkinase 1.70E-41 CL0016 Cla PK