Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01225 ATGGCGGATCTCAAAGAGCGGTTGCTTCCACCGAAACCTGCTTCTGCTGTTAATCTTAGGGAGGCAATTAATAATCGACCATCAGCCTCTGGCAGGGTACCTTTTCAAGGTGTGGATGTTCTAGGGCTGAAGAAGCGAGGGCAGGGACTTAGATCTTGGATCCGGGTAGATTCCTCTGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGGTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTAGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGATGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTACTGCAGTATGTGGTAGAGCTACAAAGGCGATTGAAGACTACTGGGGTTGATGAGGTTTGGCAGAATGATGCAAATCATGGTGCTGACTTAAACCGAAGAAGGGGAAGTAGGAATTTTGATAATGTATTTGGAAACACCTCTCCTGATTATTTGCCCTTTGAGTTTAGAGCTTTAGAAGTTGCTTTGGAAGCAGCATGTACATTTCTTGATTCCCAGTATAATATTGTTTACTACTCCTTTCAAATTCATCACACTGAAGATTTGAAGTTTAAAGATTGTCCTGCTTGCATTGTTTATCACTGTAAACCTCTGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGACGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTACCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGAGTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCATCTCCACCCGAAACTCGCAGGCTTGAGAAGAGCCTGAGCATTGCCAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTACCACTGAAAATATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAAGAATACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAATGTACGTAATCAGTTGATTCAGTTTGAGCTACTGCTGACTACCGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGGATCCTGATGCATTCAAATGGGTTCTTCTAATTACAGGAATACAAAAGGCTGATGCCACTTTAAATTATGGGTGGTTGAAGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGACGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTACCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGAGTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCATCTCCACCCGAAACTCGCAGGCTTGAGAAGAGCCTGAGCATTGCCAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTACCACTGAAAATATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAAGAATACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAATGTACGTAATCAGTTGATTCAGTTTGAGCTACTGCTGACTACCGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGGATCCTGATGCATTCAAATGGGTTCTTCTAATTACAGGAATACAAAAGGCTGATGCCACTTTAAATTATGGGTGGTTGAAGGTCACAAAATGGAATCCCATTGATTGTATTATTTCTTTTTTCCTCTTGATTAATGTTAACATGAAATGTAAGTAG 2202 41.55 MADLKERLLPPKPASAVNLREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDANHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQYNIVYYSFQIHHTEDLKFKDCPACIVYHCKPLAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVSGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESMRSSESTTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGDPDAFKWVLLITGIQKADATLNYGWLKAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVSGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESMRSSESTTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGDPDAFKWVLLITGIQKADATLNYGWLKVTKWNPIDCIISFFLLINVNMKCK 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26930061 26936993 + ClCG10G012880.1 Cla10g01225 282884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01225 733 PANTHER MAGNESIUM TRANSPORTER MRS2-10 232 469 - -
Cla10g01225 733 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 416 457 IPR045863 -
Cla10g01225 733 Gene3D Magnesium transport protein CorA, transmembrane region 417 466 - -
Cla10g01225 733 Gene3D Magnesium transport protein CorA, transmembrane region 655 713 - -
Cla10g01225 733 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 202 IPR039204 -
Cla10g01225 733 CDD Mrs2_Mfm1p-like 471 696 IPR039204 -
Cla10g01225 733 PANTHER MAGNESIUM TRANSPORTER MRS2-10 3 202 - -
Cla10g01225 733 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 654 695 IPR045863 -
Cla10g01225 733 Gene3D Magnesium transport protein CorA, transmembrane region 224 410 - -
Cla10g01225 733 Gene3D Magnesium transport protein CorA, transmembrane region 127 211 - -
Cla10g01225 733 Gene3D Magnesium transport protein CorA, transmembrane region 467 648 - -
Cla10g01225 733 PANTHER MAGNESIUM TRANSPORTER MRS2-10 471 707 - -
Cla10g01225 733 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 232 469 IPR039204 -
Cla10g01225 733 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 471 707 IPR039204 -
Cla10g01225 733 Coils Coil 498 525 - -
Cla10g01225 733 Coils Coil 260 287 - -
Cla10g01225 733 CDD Mrs2_Mfm1p-like 53 458 IPR039204 -
Cla10g01225 733 Gene3D - 41 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01225 K16075 MRS2, MFM1; magnesium transporter - csv:101217419 765.763
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00695 Cla-Chr2:8172424 Cla10g01225 Cla-Chr10:26930061 3.44E-58 dispersed
Cla05g01020 Cla-Chr5:10383588 Cla10g01225 Cla-Chr10:26930061 3.83E-51 dispersed
Cla07g00057 Cla-Chr7:625087 Cla10g01225 Cla-Chr10:26930061 3.47E-41 dispersed
Cla08g01046 Cla-Chr8:23142915 Cla10g01225 Cla-Chr10:26930061 1.88E-69 dispersed
Cla10g01225 Cla-Chr10:26930061 Cla06g00628 Cla-Chr6:7704903 5.30E-45 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01225 . 1 458 MRS2 Gene Family AT1G16010 79.3 7.2e-191 663.7
Cla08g01046 . 129 520 MRS2 Gene Family AT1G16010 51.9 5.3e-109 391.7
Cla06g00628 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.4e-158 556.2
Cla07g00057 . 790 1110 MRS2 Gene Family AT5G64560 66.7 2.1e-106 382.9
Cla02g00695 . 14 501 MRS2 Gene Family AT3G19640 64.4 5.3e-155 544.7
Cla05g01020 . 59 442 MRS2 Gene Family AT3G58970 70.3 7.9e-142 500.7
Cla02g00024 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.4e-116 415.2
Cla08g01046 . 146 520 MRS2 Gene Family AT2G03620 68.4 4.4e-137 485.0
Cla10g01225 . 13 458 MRS2 Gene Family AT2G03620 50.9 1.7e-104 376.7
Cla05g01020 . 59 441 MRS2 Gene Family AT4G28580 50.4 1.1e-92 337.4
Cla06g00628 . 1 327 MRS2 Gene Family AT5G09690 76.1 4.1e-127 451.4
Cla07g00057 . 790 1110 MRS2 Gene Family AT5G09690 62.1 2.3e-101 365.9
Cla06g00628 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.8e-89 326.2
Cla07g00057 . 825 1073 MRS2 Gene Family AT5G09720 59.0 9.3e-70 260.8
Cla10g01225 . 1 458 MRS2 Gene Family AT1G80900 78.6 2.2e-187 652.1
Cla08g01046 . 129 520 MRS2 Gene Family AT1G80900 53.4 1.7e-107 386.7
Cla01g01385 . 16 455 MRS2 Gene Family AT5G22830 68.8 2.4e-157 552.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42