Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g01225 | ATGGCGGATCTCAAAGAGCGGTTGCTTCCACCGAAACCTGCTTCTGCTGTTAATCTTAGGGAGGCAATTAATAATCGACCATCAGCCTCTGGCAGGGTACCTTTTCAAGGTGTGGATGTTCTAGGGCTGAAGAAGCGAGGGCAGGGACTTAGATCTTGGATCCGGGTAGATTCCTCTGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGGTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTAGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGATGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTACTGCAGTATGTGGTAGAGCTACAAAGGCGATTGAAGACTACTGGGGTTGATGAGGTTTGGCAGAATGATGCAAATCATGGTGCTGACTTAAACCGAAGAAGGGGAAGTAGGAATTTTGATAATGTATTTGGAAACACCTCTCCTGATTATTTGCCCTTTGAGTTTAGAGCTTTAGAAGTTGCTTTGGAAGCAGCATGTACATTTCTTGATTCCCAGTATAATATTGTTTACTACTCCTTTCAAATTCATCACACTGAAGATTTGAAGTTTAAAGATTGTCCTGCTTGCATTGTTTATCACTGTAAACCTCTGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGACGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTACCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGAGTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCATCTCCACCCGAAACTCGCAGGCTTGAGAAGAGCCTGAGCATTGCCAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTACCACTGAAAATATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAAGAATACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAATGTACGTAATCAGTTGATTCAGTTTGAGCTACTGCTGACTACCGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGGATCCTGATGCATTCAAATGGGTTCTTCTAATTACAGGAATACAAAAGGCTGATGCCACTTTAAATTATGGGTGGTTGAAGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGACGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTACCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGAGTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCATCTCCACCCGAAACTCGCAGGCTTGAGAAGAGCCTGAGCATTGCCAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTACCACTGAAAATATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAAGAATACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAATGTACGTAATCAGTTGATTCAGTTTGAGCTACTGCTGACTACCGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGGATCCTGATGCATTCAAATGGGTTCTTCTAATTACAGGAATACAAAAGGCTGATGCCACTTTAAATTATGGGTGGTTGAAGGTCACAAAATGGAATCCCATTGATTGTATTATTTCTTTTTTCCTCTTGATTAATGTTAACATGAAATGTAAGTAG | 2202 | 41.55 | MADLKERLLPPKPASAVNLREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDANHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQYNIVYYSFQIHHTEDLKFKDCPACIVYHCKPLAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVSGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESMRSSESTTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGDPDAFKWVLLITGIQKADATLNYGWLKAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVSGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESMRSSESTTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGDPDAFKWVLLITGIQKADATLNYGWLKVTKWNPIDCIISFFLLINVNMKCK | 733 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 26930061 | 26936993 | + | ClCG10G012880.1 | Cla10g01225 | 282884 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g01225 | 733 | PANTHER | MAGNESIUM TRANSPORTER MRS2-10 | 232 | 469 | - | - | |
| Cla10g01225 | 733 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 416 | 457 | IPR045863 | - | |
| Cla10g01225 | 733 | Gene3D | Magnesium transport protein CorA, transmembrane region | 417 | 466 | - | - | |
| Cla10g01225 | 733 | Gene3D | Magnesium transport protein CorA, transmembrane region | 655 | 713 | - | - | |
| Cla10g01225 | 733 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 3 | 202 | IPR039204 | - | |
| Cla10g01225 | 733 | CDD | Mrs2_Mfm1p-like | 471 | 696 | IPR039204 | - | |
| Cla10g01225 | 733 | PANTHER | MAGNESIUM TRANSPORTER MRS2-10 | 3 | 202 | - | - | |
| Cla10g01225 | 733 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 654 | 695 | IPR045863 | - | |
| Cla10g01225 | 733 | Gene3D | Magnesium transport protein CorA, transmembrane region | 224 | 410 | - | - | |
| Cla10g01225 | 733 | Gene3D | Magnesium transport protein CorA, transmembrane region | 127 | 211 | - | - | |
| Cla10g01225 | 733 | Gene3D | Magnesium transport protein CorA, transmembrane region | 467 | 648 | - | - | |
| Cla10g01225 | 733 | PANTHER | MAGNESIUM TRANSPORTER MRS2-10 | 471 | 707 | - | - | |
| Cla10g01225 | 733 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 232 | 469 | IPR039204 | - | |
| Cla10g01225 | 733 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 471 | 707 | IPR039204 | - | |
| Cla10g01225 | 733 | Coils | Coil | 498 | 525 | - | - | |
| Cla10g01225 | 733 | Coils | Coil | 260 | 287 | - | - | |
| Cla10g01225 | 733 | CDD | Mrs2_Mfm1p-like | 53 | 458 | IPR039204 | - | |
| Cla10g01225 | 733 | Gene3D | - | 41 | 124 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g00695 | Cla-Chr2:8172424 | Cla10g01225 | Cla-Chr10:26930061 | 3.44E-58 | dispersed | |
| Cla05g01020 | Cla-Chr5:10383588 | Cla10g01225 | Cla-Chr10:26930061 | 3.83E-51 | dispersed | |
| Cla07g00057 | Cla-Chr7:625087 | Cla10g01225 | Cla-Chr10:26930061 | 3.47E-41 | dispersed | |
| Cla08g01046 | Cla-Chr8:23142915 | Cla10g01225 | Cla-Chr10:26930061 | 1.88E-69 | dispersed | |
| Cla10g01225 | Cla-Chr10:26930061 | Cla06g00628 | Cla-Chr6:7704903 | 5.30E-45 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g01225 | K16075 | - | csv:101217419 | 765.763 |