Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g01232 | ATGGCGGGTGAGGCGGCACGACCGAGGAATGTTTTATTTGGGAAATACGAAATGGGTCGGCTATTGGGGAAAGGGACCTTTGCGAAGGTCTATTATGGAAGAAACTTGATGACCCACGAGAGTGTTGCCATTAAAGTTATCCTCAAGGACAGGGTGAAGAAAGAGGGGCTTCTTGAGCAAATCCGGCGAGAAATTTCTGTTATGGGGTTGGTTCGTCATCCCCATATTGTGGAATTGAAAGAAGTAATGGCGACGAAATCGAAGGTGTATTTTGTGATGGAGTATGTTAATGGGGGCGAACTGTTTGTGAAATTGTCTCAGCAAGGAAAATTGACTGAAGATGGAGCAAGAAAGTACTTTCAACAACTTATCTCAGCCGTGGACTTTTGCCACAGCCGTGGTGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTTGACGAGAATGGGAATTTGAAAGTCTCTGATTTTGGTCTCTCCGCCCTGCCGGAGCAGCTCCGGATCGACGGTTTGCTTCACACACGGTGTGGAACTCCGGCGTATGTGGCGCCTGAGGTACTCAGAAAGAAGGGCTATGACGGTGCTAAGGCGGATATTTGGTCTTGTGGGGTGATTTTGTTTGTGTTGCTTGCTGGGACTCTACCATTTCGAGCTGATAATGCGATGAAGTTGTATAGGAAGATTTTCAAGGCGGAGTTTGAATTTCCTTCATGGTTTTCTTCAGAAGCCAAGGAAATGGTATCTAAGCTTCTGGTTGTTGATCCTCAAAAGAGAGCTTCAATGGTTCAGATAATGCAGAGTCCTTGGTTTCAAAAGGGCTTCACAAAGCCAGTTTCCTTCATTGAGAAAGATGAATTCAACGATGAATTCTCTGAATTGGCAAATCCCAAGTTGTTGTCCTCTTCTCCTCCTTTTTACAATGCCTTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTTGAAAGCAAGAAGAAACAAGGCTCCATTTTCACTTCGAAATGCTCTGCTTCAGCCATTATAGCCAAGCTTCAGTCTCTGGCCGTGAAGCTCAACTTCAAGGCTACTAATCTGAAGGAGTTCAAGGTGAGGCTGCAGGCCAAGGAGGAAGGGAGGAAAGGGAAGTTGACGGTGACCGCAGAGGTTTACGAGGCGGCTCCGGAGCTGGCAGTGGTTGAGTTCTCAAAGTCGGCCGGCGACACTTTGGAGTACAATAACTTCTGTGAGAAGGATGTGAGGCCTGCATTGAAAGACATAGTTTGGAGCTGGCAAGGAGAGAGTGAGTGCCTATAA | 1308 | 46.33 | MAGEAARPRNVLFGKYEMGRLLGKGTFAKVYYGRNLMTHESVAIKVILKDRVKKEGLLEQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEDGARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKKGYDGAKADIWSCGVILFVLLAGTLPFRADNAMKLYRKIFKAEFEFPSWFSSEAKEMVSKLLVVDPQKRASMVQIMQSPWFQKGFTKPVSFIEKDEFNDEFSELANPKLLSSSPPFYNAFEFISSMSSGFDLSSLFESKKKQGSIFTSKCSASAIIAKLQSLAVKLNFKATNLKEFKVRLQAKEEGRKGKLTVTAEVYEAAPELAVVEFSKSAGDTLEYNNFCEKDVRPALKDIVWSWQGESECL | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 27067368 | 27068675 | + | ClCG10G012950.1 | Cla10g01232 | 282891 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g01232 | 435 | Pfam | Protein kinase domain | 16 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla10g01232 | 435 | Pfam | NAF domain | 304 | 360 | IPR004041 | GO:0007165 | |
Cla10g01232 | 435 | ProSiteProfiles | Protein kinase domain profile. | 16 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla10g01232 | 435 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 135 | 147 | IPR008271 | GO:0004672|GO:0006468 | |
Cla10g01232 | 435 | SMART | serkin_6 | 16 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla10g01232 | 435 | CDD | STKc_SnRK3 | 15 | 270 | - | - | |
Cla10g01232 | 435 | ProSiteProfiles | NAF domain profile. | 302 | 327 | IPR018451 | GO:0007165 | |
Cla10g01232 | 435 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 54 | IPR017441 | GO:0005524 | |
Cla10g01232 | 435 | Gene3D | Transferase(Phosphotransferase) domain 1 | 8 | 304 | - | - | |
Cla10g01232 | 435 | CDD | CIPK_C | 308 | 422 | - | - | |
Cla10g01232 | 435 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED | 9 | 434 | - | - | |
Cla10g01232 | 435 | Gene3D | Kinase associated domain 1, KA1 | 305 | 427 | - | - | |
Cla10g01232 | 435 | SUPERFAMILY | Protein kinase-like (PK-like) | 12 | 284 | IPR011009 | - | |
Cla10g01232 | 435 | PANTHER | - | 9 | 434 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g01224 | Cla-Chr6:25477279 | Cla10g01232 | Cla-Chr10:27067368 | 7.93E-175 | dispersed | |
Cla10g01232 | Cla-Chr10:27067368 | Cla03g00613 | Cla-Chr3:7315854 | 1.41E-155 | dispersed | |
Cla11g01469 | Cla-Chr11:28335109 | Cla10g01232 | Cla-Chr10:27067368 | 1.88E-50 | dispersed | |
Cla10g01232 | Cla-Chr10:27067368 | Cla05g01685 | Cla-Chr5:28525381 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80862 | PF00069 | Pkinase | 1.80E-77 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g01232 | - | - | csv:101218600 | 819.305 |