Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01233 ATGCTGCTGCGAAGGGAGCTGAACAGGAAAAGGGAGGAGAGAGAAATGAAGGGAAGGAGAGTAAGCAAAGCGGGAGCTCTGACCACCAGCTTATCGAATCCACCATCGTCAATCCCCTTATCATATTCTGGATTAAGATTTCATTTCGTTTCAAAAAGAGAGGGGAAAAAGGAGAGGAACAATAAAATGGCTGCTGGAGGGTCTGGTTCTGGGCAGCCACAATTTATTTTGAGGGCTGGAGATGAGAGTTTTTCGCACGCGCCGTTGATCGAGAACCCGGAAACTGATCAGATTGTTGTTCCTGATAAGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGGTTTCTTGTTTCTATTGCATATATTGATCCTGGGAATTTTGAGACTGATCTACAATCTGGAGCACAGTACAAGTATGGGTTGCTTTGGATCATATTAGTGGCTTCCTTTGCTGCCCTCATCATTCAGTCCTTAGCAGCCAATCTAGGGGTCGTCACAGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCTAAGGCGCAAAATTTCGTCCTCTGGATCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCCGAAGTTATAGGAACTGCTTTTGCATTGAATATGCTCTTCAGCATTCCTGTTTGGTGTGGCGTTCTTCTGACAGGGCTTAGTACACTATTACTTCTTGCACTGCAGCAATATGGGATTAGAAAGCTTGAATTCTTGATTGCTTTTCTCGTATTGACAATTGCGATTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCTGACGTTGGAGAAATTTTTTATGGGCTATTTGTCCCTCAATTGAAAGGAAGTGGTGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTGTTTCTTCATTCAGCACTGGTGCTCTCTAGGAAAATACCCCGATCCCTTTCTGGCATCAAGGAAGCTTGCAGATTTTACATGATAGAGAGTGGCTTTGCTCTTATGGTGGCCTTCCTCATTAATGTGTCAGTCATTTCAGTTAGTGGTGCAGTTTGCAATGCCCCAGATCTAAATAAGGAGGACCAAATGAGCTGCAATGATTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCCATTGCTTTGTTGGCATCTGGTCAGAGTTCTACCATAACAGGAACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTCGATTTGAAACTGACGCCGTGGATCAGAAACTTTTTAACTCGAAGCTTAGCAATTGTTCCTAGTTTGATTGTCGCAATCATTGGTGGGTCTTCTGGGGCTGGGAAGCTGATCATTATTGCGTCGATTACAGTATTGACATGGATTATTGGCTTCCTCATCATGGCTATAAATATATACTACCTCATGAGCCGTTTCATCCACATGCTCCTTCATAACGATCTACACCTCGCAGCAGTTGTCTTCATAGGGATACTTGGATTTTCAGGCGTGGCACTATATTTAGCTGGAATTGCTTATCTGGTTTTGAGAAAGAGCAAGGAGATCACTCATCTCTTAGCACTAACAACAGATGAAAGTAGAAGACTGAGCAACGAGCCGAGTAAGACATCGGGATATAGTCTCCCGAACGAAGATATAGTAAGCATGCAGTTGCCTCAACGAGTTAGAACTGCCAATGATGTAAACTGA 1728 43.17 MLLRRELNRKREEREMKGRRVSKAGALTTSLSNPPSSIPLSYSGLRFHFVSKREGKKERNNKMAAGGSGSGQPQFILRAGDESFSHAPLIENPETDQIVVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYGLLWIILVASFAALIIQSLAANLGVVTGKHLAEHCKAEYPKAQNFVLWILAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLLLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAKPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSLSGIKEACRFYMIESGFALMVAFLINVSVISVSGAVCNAPDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWIRNFLTRSLAIVPSLIVAIIGGSSGAGKLIIIASITVLTWIIGFLIMAINIYYLMSRFIHMLLHNDLHLAAVVFIGILGFSGVALYLAGIAYLVLRKSKEITHLLALTTDESRRLSNEPSKTSGYSLPNEDIVSMQLPQRVRTANDVN 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27084385 27090182 + ClCG10G012960.1 Cla10g01233 282892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01233 575 PRINTS Natural resistance-associated macrophage protein signature 429 446 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla10g01233 575 PRINTS Natural resistance-associated macrophage protein signature 291 314 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla10g01233 575 PRINTS Natural resistance-associated macrophage protein signature 241 262 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla10g01233 575 PRINTS Natural resistance-associated macrophage protein signature 188 214 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla10g01233 575 PRINTS Natural resistance-associated macrophage protein signature 216 235 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla10g01233 575 PRINTS Natural resistance-associated macrophage protein signature 401 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla10g01233 575 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 108 476 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla10g01233 575 MobiDBLite consensus disorder prediction 1 21 - -
Cla10g01233 575 Pfam Natural resistance-associated macrophage protein 129 476 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla10g01233 575 MobiDBLite consensus disorder prediction 1 32 - -
Cla10g01233 575 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 461 571 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla10g01233 575 PANTHER METAL TRANSPORTER NRAMP1 461 571 - -
Cla10g01233 575 PANTHER METAL TRANSPORTER NRAMP1 70 462 - -
Cla10g01233 575 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 70 462 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla10g01233 575 Hamap Divalent metal cation transporter MntH [mntH]. 94 485 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00615 Cla-Chr8:18076250 Cla10g01233 Cla-Chr10:27084385 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01233 K21398 - csv:101209649 921.768