Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g01234 | ATGGTTTCCGGCCAAATTGTATGTGTCACCGGTGCCGGAGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGCTACACTGTCAGAGGAACCGTTAGAAACCCAGATGACCAAAAGAATGCTCATTTGAACAACATAGAAGGAGCTAAAGAGCGGTTGTCTTTGTTTGGTGCTGATCTTCTTGATTTTGACAGTCTCAAAGCAGCTATTATGGGTTGCCATGGTGTTTTCCACACCGCGTCTCCGGTGACCGATGATCCCGAAAAGGTGGAACAGGCCATAATTGGAACAAAGAATGTCATGACCGCTGCCGCTGAAGCAAACGTTCGACGAGTTGTGTTCACGTCCTCGATTGGCACCGTCTACATGAACCCTAACCGAAGCCCGGACGTGGTGGTGGACGAGTCTTGTTGGAGTGATCTTGAGTTTTGCAAGAACACCAAGAATTGGTACTGCTATGCAAAGACAATGGCAGAACAAGCAGCATGGGAAGTGGCAAAAGAAAGAGGAGTTGATCTTGTAGTTGTAAATCCAATGTTGGTGTTGGGACCTTTGTTGCAAGAAGGTGTGAATGCTAGTGTAGTTCACATAATGAAGTACTTAACGGGATCAGCAAAGACATATGTAAATGCAGTTCAAGGTTATGTTGATGTTAAGGATGTTGCAAAAGCCCATATTTTGGTTTATGAAACTCCTTCTGCTTCAGGAAGATATATTTGTGTTGAGATTTCCGGCCAAATTGTTTGTGTCACCGGCGCCGGAGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGCTACACTGTCAGAGGAACCGTTAGAAACCCAGATGACCAAAAGAATGCTCATTTGAACAACTTAGAAGGAGCTAAAGAGCGGTTGTCTTTGTTTAGTGCTGATCTTCTTGATTTTGACAGTCTCAAAGCAGCTATTATGGGTTGCCATGGTGTTTTCCACACCGCGTCTCCGGTGACCGATGATCCCGAAAAGGTGGAACAGGCCATAATCGGAACAAAGAATGTCATGACCGCGGCTGCTGAAGCAAATGTTCGACGAGTGGTGTTCACGTCGTCGATCGGCTCTGTCTACATGAACCCTAACCGAAGCCCCGACGTGGTGGTGGATGAGTCTTGTTGGAGATCAGCAAAAACATATGTAAATGCAGTTCAAGGTTATGTTGATGTCAAGGATGTTGCAAAAGCCCATGTTTTGGTTTATGAAACTCCTTCCGCTTCAGGAAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTTGATATTCTTGCAAGCTTGTTCCCTCAGTATCCTCTCCCTACCAAGTGTTCTGATGAGGTGAATCCCAAGAAGAAACCTTACAAATACACAATTGAGAAGCTAAAGTCATTGGGAATGGAATTCACACCAATCAAACAATGTATATATGAAACTGTGAAGAGCCTGCAAGAAAAGGGTCATCTTCCTCTTCCCAGCTCCCAACTTCAACATTGA | 1515 | 44.69 | MVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLNNIEGAKERLSLFGADLLDFDSLKAAIMGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNRSPDVVVDESCWSDLEFCKNTKNWYCYAKTMAEQAAWEVAKERGVDLVVVNPMLVLGPLLQEGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHILVYETPSASGRYICVEISGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLNNLEGAKERLSLFSADLLDFDSLKAAIMGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGSVYMNPNRSPDVVVDESCWRSAKTYVNAVQGYVDVKDVAKAHVLVYETPSASGRYICVESMLHRGELVDILASLFPQYPLPTKCSDEVNPKKKPYKYTIEKLKSLGMEFTPIKQCIYETVKSLQEKGHLPLPSSQLQH | 504 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 27099940 | 27111515 | - | ClCG10G012970.1 | Cla10g01234 | 282893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g01234 | 504 | Pfam | NAD dependent epimerase/dehydratase family | 7 | 237 | IPR001509 | - | |
Cla10g01234 | 504 | CDD | FR_SDR_e | 251 | 472 | - | - | |
Cla10g01234 | 504 | Gene3D | - | 247 | 388 | - | - | |
Cla10g01234 | 504 | Gene3D | - | 1 | 246 | - | - | |
Cla10g01234 | 504 | Gene3D | - | 389 | 504 | - | - | |
Cla10g01234 | 504 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 247 | 386 | - | - | |
Cla10g01234 | 504 | Pfam | NAD(P)H-binding | 255 | 377 | IPR016040 | - | |
Cla10g01234 | 504 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 388 | 498 | - | - | |
Cla10g01234 | 504 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 3 | 247 | - | - | |
Cla10g01234 | 504 | PANTHER | CINNAMOYL-COA REDUCTASE-LIKE PROTEIN | 247 | 386 | - | - | |
Cla10g01234 | 504 | PANTHER | CINNAMOYL-COA REDUCTASE-LIKE PROTEIN | 3 | 247 | - | - | |
Cla10g01234 | 504 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 246 | 490 | IPR036291 | - | |
Cla10g01234 | 504 | PANTHER | CINNAMOYL-COA REDUCTASE-LIKE PROTEIN | 388 | 498 | - | - | |
Cla10g01234 | 504 | CDD | FR_SDR_e | 7 | 245 | - | - | |
Cla10g01234 | 504 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 2 | 244 | IPR036291 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g01860 | Cla-Chr9:36304801 | Cla10g01234 | Cla-Chr10:27099940 | 1.15E-14 | dispersed | |
Cla10g01234 | Cla-Chr10:27099940 | Cla10g01237 | Cla-Chr10:27115404 | 7.67E-113 | dispersed | |
Cla10g01234 | Cla-Chr10:27099940 | Cla10g01236 | Cla-Chr10:27110903 | 3.05E-146 | proximal | |
Cla10g01234 | Cla-Chr10:27099940 | Cla09g00296 | Cla-Chr9:2853720 | 3.11E-106 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g01234 | K09753 | - | csv:116401652 | 471.085 |