Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01234 ATGGTTTCCGGCCAAATTGTATGTGTCACCGGTGCCGGAGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGCTACACTGTCAGAGGAACCGTTAGAAACCCAGATGACCAAAAGAATGCTCATTTGAACAACATAGAAGGAGCTAAAGAGCGGTTGTCTTTGTTTGGTGCTGATCTTCTTGATTTTGACAGTCTCAAAGCAGCTATTATGGGTTGCCATGGTGTTTTCCACACCGCGTCTCCGGTGACCGATGATCCCGAAAAGGTGGAACAGGCCATAATTGGAACAAAGAATGTCATGACCGCTGCCGCTGAAGCAAACGTTCGACGAGTTGTGTTCACGTCCTCGATTGGCACCGTCTACATGAACCCTAACCGAAGCCCGGACGTGGTGGTGGACGAGTCTTGTTGGAGTGATCTTGAGTTTTGCAAGAACACCAAGAATTGGTACTGCTATGCAAAGACAATGGCAGAACAAGCAGCATGGGAAGTGGCAAAAGAAAGAGGAGTTGATCTTGTAGTTGTAAATCCAATGTTGGTGTTGGGACCTTTGTTGCAAGAAGGTGTGAATGCTAGTGTAGTTCACATAATGAAGTACTTAACGGGATCAGCAAAGACATATGTAAATGCAGTTCAAGGTTATGTTGATGTTAAGGATGTTGCAAAAGCCCATATTTTGGTTTATGAAACTCCTTCTGCTTCAGGAAGATATATTTGTGTTGAGATTTCCGGCCAAATTGTTTGTGTCACCGGCGCCGGAGGCTTCATTGCTTCATGGCTTGTAAAGCTTCTTCTTGAGAAGGGCTACACTGTCAGAGGAACCGTTAGAAACCCAGATGACCAAAAGAATGCTCATTTGAACAACTTAGAAGGAGCTAAAGAGCGGTTGTCTTTGTTTAGTGCTGATCTTCTTGATTTTGACAGTCTCAAAGCAGCTATTATGGGTTGCCATGGTGTTTTCCACACCGCGTCTCCGGTGACCGATGATCCCGAAAAGGTGGAACAGGCCATAATCGGAACAAAGAATGTCATGACCGCGGCTGCTGAAGCAAATGTTCGACGAGTGGTGTTCACGTCGTCGATCGGCTCTGTCTACATGAACCCTAACCGAAGCCCCGACGTGGTGGTGGATGAGTCTTGTTGGAGATCAGCAAAAACATATGTAAATGCAGTTCAAGGTTATGTTGATGTCAAGGATGTTGCAAAAGCCCATGTTTTGGTTTATGAAACTCCTTCCGCTTCAGGAAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTTGATATTCTTGCAAGCTTGTTCCCTCAGTATCCTCTCCCTACCAAGTGTTCTGATGAGGTGAATCCCAAGAAGAAACCTTACAAATACACAATTGAGAAGCTAAAGTCATTGGGAATGGAATTCACACCAATCAAACAATGTATATATGAAACTGTGAAGAGCCTGCAAGAAAAGGGTCATCTTCCTCTTCCCAGCTCCCAACTTCAACATTGA 1515 44.69 MVSGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLNNIEGAKERLSLFGADLLDFDSLKAAIMGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGTVYMNPNRSPDVVVDESCWSDLEFCKNTKNWYCYAKTMAEQAAWEVAKERGVDLVVVNPMLVLGPLLQEGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHILVYETPSASGRYICVEISGQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNAHLNNLEGAKERLSLFSADLLDFDSLKAAIMGCHGVFHTASPVTDDPEKVEQAIIGTKNVMTAAAEANVRRVVFTSSIGSVYMNPNRSPDVVVDESCWRSAKTYVNAVQGYVDVKDVAKAHVLVYETPSASGRYICVESMLHRGELVDILASLFPQYPLPTKCSDEVNPKKKPYKYTIEKLKSLGMEFTPIKQCIYETVKSLQEKGHLPLPSSQLQH 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27099940 27111515 - ClCG10G012970.1 Cla10g01234 282893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01234 504 Pfam NAD dependent epimerase/dehydratase family 7 237 IPR001509 -
Cla10g01234 504 CDD FR_SDR_e 251 472 - -
Cla10g01234 504 Gene3D - 247 388 - -
Cla10g01234 504 Gene3D - 1 246 - -
Cla10g01234 504 Gene3D - 389 504 - -
Cla10g01234 504 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 247 386 - -
Cla10g01234 504 Pfam NAD(P)H-binding 255 377 IPR016040 -
Cla10g01234 504 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 388 498 - -
Cla10g01234 504 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 247 - -
Cla10g01234 504 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 247 386 - -
Cla10g01234 504 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 3 247 - -
Cla10g01234 504 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 246 490 IPR036291 -
Cla10g01234 504 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 388 498 - -
Cla10g01234 504 CDD FR_SDR_e 7 245 - -
Cla10g01234 504 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 244 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01860 Cla-Chr9:36304801 Cla10g01234 Cla-Chr10:27099940 1.15E-14 dispersed
Cla10g01234 Cla-Chr10:27099940 Cla10g01237 Cla-Chr10:27115404 7.67E-113 dispersed
Cla10g01234 Cla-Chr10:27099940 Cla10g01236 Cla-Chr10:27110903 3.05E-146 proximal
Cla10g01234 Cla-Chr10:27099940 Cla09g00296 Cla-Chr9:2853720 3.11E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01234 K09753 - csv:116401652 471.085