Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g01236 | ATGCTGATCGATACCTCTGCAATTTCCGGCGAAATTGTGTGTGTCACCGGCGCCGGAGGCTTCATTGCTTCATGGCTCCTGAAGCTTCTTCTTGAGAAGGGCTACACTGTTAGAGGAACCGTTAGAAACCCAGATGATCAAAAGAATGCTCATTTGAAGAACTTAGAAGGAGCTAAAGAGAGATTGTCTTTGTTTAGTGCTGATCTCCTTGATTTTGACAGCCTTAAAGCAGCCATTTTGGGCTGTCATGGTGTTTTCCACACCGCGTCTCCTGTGACCGATGACCATGACAAAGTGGAACAAGCCATAATTGGAACAAAGAACGTCATGACTGCTGCCGCTGAAGCAAACGTTCAACGTGTGGTCTTCACGTCGTCGATCGGGACCGTTTATATGAACCCTAACCGACACCCAGACACGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAACACCAAGAATTGGTACTGCTATGCAAAGACAATGGCAGAACAAGCAGCATGGGAAGTGGCAAAAGAAAGAGGAGTTGATCTTGTAGTTGTAAATCCAATGTTGGTGTTGGGACCTTTGTTGCAAGAAGGTGTAAATGCTAGTGTAGTTCACATAATGAAGTATTTAACGGGATCAGCAAAGACATATGTAAATGCAGTTCAAGGTTATGTTGATGTTAAGGATGTTGCAAAAGCCCATATTTTGGTTTATGAAACTCCTTCCGCTTCAGGAAGATATATTTGTGTTGAGAGTATGCTTCATCGTGGAGAATTGGTTGATATTCTTAAAAACTTCTTCCCTCAATATCCTCTTCCTACCAAGTGTTCTGATGAGATAAATCCCAGAAAGAAACCTTACAAGTACACAGTTGAGAAGCTAAAGTCATTAGGAATGGAATTCACACCAATCAAACAATGCATATATGAAACTGTAAAGAGCCTACAAGACAAGGGTCATCTTCCACCTCCTTCCCAACTTCAACATTATTGA | 993 | 42.5 | MLIDTSAISGEIVCVTGAGGFIASWLLKLLLEKGYTVRGTVRNPDDQKNAHLKNLEGAKERLSLFSADLLDFDSLKAAILGCHGVFHTASPVTDDHDKVEQAIIGTKNVMTAAAEANVQRVVFTSSIGTVYMNPNRHPDTVVDESCWSDLEFCKNTKNWYCYAKTMAEQAAWEVAKERGVDLVVVNPMLVLGPLLQEGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHILVYETPSASGRYICVESMLHRGELVDILKNFFPQYPLPTKCSDEINPRKKPYKYTVEKLKSLGMEFTPIKQCIYETVKSLQDKGHLPPPSQLQHY | 330 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 27110903 | 27113357 | - | ClCG10G012985.1 | Cla10g01236 | 282895 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g01236 | 330 | CDD | FR_SDR_e | 13 | 298 | - | - | |
| Cla10g01236 | 330 | PANTHER | CINNAMOYL-COA REDUCTASE | 9 | 324 | - | - | |
| Cla10g01236 | 330 | Pfam | NAD dependent epimerase/dehydratase family | 13 | 243 | IPR001509 | - | |
| Cla10g01236 | 330 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 9 | 324 | - | - | |
| Cla10g01236 | 330 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 7 | 315 | IPR036291 | - | |
| Cla10g01236 | 330 | Gene3D | - | 3 | 329 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g02233 | Cla-Chr2:37473053 | Cla10g01236 | Cla-Chr10:27110903 | 1.31E-105 | dispersed | |
| Cla02g02239 | Cla-Chr2:37538466 | Cla10g01236 | Cla-Chr10:27110903 | 1.16E-98 | dispersed | |
| Cla03g00031 | Cla-Chr3:320249 | Cla10g01236 | Cla-Chr10:27110903 | 3.61E-79 | dispersed | |
| Cla10g00724 | Cla-Chr10:11568652 | Cla10g01236 | Cla-Chr10:27110903 | 4.70E-72 | dispersed | |
| Cla10g01236 | Cla-Chr10:27110903 | Cla10g01238 | Cla-Chr10:27128055 | 0 | dispersed | |
| Cla10g01234 | Cla-Chr10:27099940 | Cla10g01236 | Cla-Chr10:27110903 | 3.05E-146 | proximal | |
| Cla10g01236 | Cla-Chr10:27110903 | Cla10g01237 | Cla-Chr10:27115404 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g01236 | K09753 | - | csv:116401652 | 615.535 |