Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01238 ATGCTTACTCATTTGTTGTGGTTCCATTCTACCCTACATTTGGCTCTTCATCAATCCCTTCCCTCACCCACTCTTAACGCCCTCATTTATAACCATTTCCATCTGTCCAAAATGCCCCTCGCCGCCGCCGTAGCTTCCGGTCAAATTGTTTGTGTCACCGGCGCCGGTGGCTTCATTGCCTCTTGGCTTGTGAAGCTTCTTCTTCAAAAGGGTTACACCGTTAGAGGCACTGTAAGAAACCCAGATGATCGGAAGAATGATCATTTGAAAGAGTTAGATGGAGCTGAGGAAAGGTTGACGCTGTACAGTGCTGATCTACTTGATTTCGACAGTCTTAAAGCCGCCATTATCGGTTGTGATGGTGTTTTCCACACGGCGTCTCCGGTGACTGACGACCCCGAAAAGGTGGAGCAGGCAATAATTGGGACGAAAAATGTTATAATGGCGGCGGCGGAGGCCAAGGTCCGGCGAGTGGTGTTCACATCGTCCATTGGAACTATACACATGAACCCTAATCGGAGCCCCGACACGGTGGTGGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAAAATACAAAGAATTGGTATTGTTATGCAAAAACAGTGGCAGAGCAAACAGCATGGGCAATGGCAGAGGAGAAAGGAGTGGATTTAGTAGTGGTGAATCCAATGTTGGTGCTTGGACCATTATTACAACAAACAATCAATGCAAGTGTAGCTCATATAATGAAGTACTTGACTGGCTCAGTCAAGACATACGTCAATGCAGTTCAAGGATACGTTCATGTTAAGGATGTTGCAAAAGCTCACTTGTTGGTGTATGAGACTTCCTCTGCATTTGGTAGATATATTTGTGTTGAAACTATGCTTCATCGTGGAGAATTGGTTGAAATTTTGGCTAAATTCTTTCCTGAGTATCCCATTCCTACCAAGTGCTCTGACCAGGTGAACCCTAAGAAGAAACCTTACAAATTTAGTGTAAAAAAGCTGAAGGACTTGGGAATGGATCAATTCATACCTGTGAAGCAATGCATATATGAAACTGTGAAAAGCCTTCAAGAGAAGGGTCATCTTCCACTTCCTTAA 1089 44.54 MLTHLLWFHSTLHLALHQSLPSPTLNALIYNHFHLSKMPLAAAVASGQIVCVTGAGGFIASWLVKLLLQKGYTVRGTVRNPDDRKNDHLKELDGAEERLTLYSADLLDFDSLKAAIIGCDGVFHTASPVTDDPEKVEQAIIGTKNVIMAAAEAKVRRVVFTSSIGTIHMNPNRSPDTVVDESCWSDLDFCKNTKNWYCYAKTVAEQTAWAMAEEKGVDLVVVNPMLVLGPLLQQTINASVAHIMKYLTGSVKTYVNAVQGYVHVKDVAKAHLLVYETSSAFGRYICVETMLHRGELVEILAKFFPEYPIPTKCSDQVNPKKKPYKFSVKKLKDLGMDQFIPVKQCIYETVKSLQEKGHLPLP 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27128055 27135540 - ClCG10G013000.2 Cla10g01238 282897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01238 362 Pfam NAD dependent epimerase/dehydratase family 50 277 IPR001509 -
Cla10g01238 362 PANTHER CINNAMOYL-COA REDUCTASE 45 360 - -
Cla10g01238 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 354 IPR036291 -
Cla10g01238 362 CDD FR_SDR_e 50 335 - -
Cla10g01238 362 Gene3D - 41 362 - -
Cla10g01238 362 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 45 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02302 Cla-Chr5:34623679 Cla10g01238 Cla-Chr10:27128055 1.95E-71 dispersed
Cla10g01236 Cla-Chr10:27110903 Cla10g01238 Cla-Chr10:27128055 0 dispersed
Cla10g01238 Cla-Chr10:27128055 Cla11g01855 Cla-Chr11:32080129 4.19E-84 dispersed
Cla10g01237 Cla-Chr10:27115404 Cla10g01238 Cla-Chr10:27128055 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01238 K09753 - csv:101219069 612.068