Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01241 ATGGCTGGAGGAACTCCCGATGGCCACTCCTCCGGCAATACGCCTTCGACGCCTGATTCCCCCACCACCTCCGCCGGTTTCGAAACAGACCAGCTTCCTCATCTCAGTCAAACTTCCGACAACTACCCCGATGAGGATGAAGCGGCGGTTGATCCTCATATCCTTCCCGACGAGCCTGACCCCGATGAAGAAGAGGAAGGAGAGGATCTCTACCACGACAACTTCTTGGATGATTATCGGAGGATGGACGAGCATGACCAGTACGAGTCCTTGGGCCTCGACGATTCTTTAGAGGACGAGAGGGATTTGGATCAGATTATGGAGGACAGACGAGCTGCCGAGATGGAACTGGAAACTCGGGATGCTCAGTTGACCCGTCGGAAGCTTCCTGAGCTATTACATGATCATGACTCTGAGGACGACAACTACAGGCCTTCAAAAAGATCAAGAGCTGATTTTCGGCCTCCGGCTGGAGCAAGAAGCTATGATGACATTGATGGTATGCAAAGTTCTCCAGGTAGATCACAAAGGGAAAACTCACGAGACGATGTGCCCATGACAGATCATTCTGTTGATGACCAATATGAGGATGAAGATGATGATGAAAATGAGCATGAGATGTATCGTGTTCAAGGGCCGCTTAGAGAACATGTTACCATGGATGCAGTTAGACGCTTTATAGGGAAAAAATTTAAGAAATTCTTGGAAACATATGTGAATCCAAAGAGTGGAAATGGTGAGCTTGAGTATATGCGATTGATAAATGAGATGGTGTTAGGTGAGCATCTACTTCACTCCAATAGGTGCAGTTTGGAGATTGATTACAAACAGTTCATCTTTGTTCATCCAAATATTGCAATCTGGTTGGCTGATGCACCCCAGCCTGTCTTAGAAGTTATGGAAGATGTTGCAAAGAAGGTTGTCTTTGACATACATCCAAACTACAAAAATATCCACCAAAAGATCTATGTTCGCATCAATAATTTACCAGTCTATGATCAGATTCGAAATATTAGGCAAATTCATTTAAATACCATGATTCGCATCGGGGGTGTAGTGACCCGGCGCTCTGGTGTCTTCCCCCAGTTGCAGCAGGTTAAGTATGATTGTAATAAATGTGGCACAATATTGGGACCATTTTTTCAGAATTCTTATTCAGAGGTCAAGGTTGGTTCTTGTCCTGAATGCCAATCAAAAGGGCCATTCACAGTAAATGTCGAGCAGACGATATATAGGAATTATCAAAAGCTAACCCTCCAAGAAAGTCCAGGAATTGTGCCAGCTGGTCGACTTCCAAGGTACAAGGAAGTGATACTATTGAATGATCTGATTGATTGTGCCCGTCCTGGGGAAGAAATTGAAGTCACAGGCATTTATACAAATAATTTTGACTTATCATTGAATACAAAGAACGGTTTTCCTGTATTTTCCACTGTTGTTGAAGCAAATTATATTACCAAGAAGCAAGATCTGTTTTCTGCTTACAAGCTTACCCAGGAAGACAAGGAAGAGATTGAGAAGTTGGCTAAAGACCCTAGAATTGGAGAAAGGATAATCAAGTCCATTGCACCATCAATCTATGGTCACGATGACATAAAAACAGCAATTGCTCTTGCAATGTTTGGAGGTCAAGAAAAAAATGTTGAAGGGAAACACCGGTTACGAGGCGATATCAATGTTCTTCTACTAGGTGATCCTGGCACAGCCAAATCTCAGTTTCTCAAGTATGTCGAGAAAACTGGGCATAGAGCAGTGTACACCACAGGGAAAGGAGCTTCGGCTGTAGGACTAACAGCAGCAGTGCATAAGGATCCTGTCACAAGGGAGTGGACCCTTGAAGGAGGTGCCCTTGTATTGGCCGATAGAGGAATCTGTCTTATTGATGAGTTTGACAAAATGAATGATCAGGACAGGGTGAGCATCCATGAAGCAATGGAGCAACAGAGCATTAGCATATCAAAAGCTGGAATAGTCACTTCTCTTCAAGCCAGATGTTCAGTCATTGCTGCTGCCAATCCCATTGGAGGAAGGTACGACTCCTCAAAAACATTTTCCCAAAATGTTGAGCTGACCGATCCTATCATTTCTCGATTTGACATCCTCTGCGTTGTTAAGGATGTGGTAGACTCTGTAACAGACGAGATGCTTGCTAGGTTTGTGGTTGATAGTCATTTCAAATCACAGCCAAAGGGAGCCAATCTTGATGACAAGTCTATAAATGAATCTCAGGAGGACAGTCAAGACTCTGCAAGGCCACTGGATCCGGAGGTGCTCCCCCAAGATCTGCTGCGGAAATACATAACTTACTCTAAGTTAAATGTTTTCCCAAGGTTGCATGATGCTGATTTGGATAAGTTAACACATGTCTATGCAGAATTACGAAGGGAATCTTCTCACGGGCAAGGAGTTCCCATTGCAGTTAGGCACATAGAGTCAATGATACGCATGTCTGAAGCACATGCAAGAATGCACCTTAGACAGCATGTCACACAAGAAGATGTTGATATGGCAATTCGTGTGTTACTTGATTCTTTCATTTCGACCCAGAAATTTGGAGTGCAGAAAGCTCTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAGAAGGATTACAATGAACTGCTGCTATATCTGCTCCGAGAGCTTGTGAAGAATGCACTCCACTTTGAGGAAATTGTTCGTGGATCTACATCGGAGCTTACCCACATCAATGTAAAATTGGAAGACCTACAAAGCAAGGCACAGGATCACGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAATTTTGTTCTGGATGAAGAGCATGGACTAATCAGGCATCACCTTGCCAGATGA 2856 43.59 MAGGTPDGHSSGNTPSTPDSPTTSAGFETDQLPHLSQTSDNYPDEDEAAVDPHILPDEPDPDEEEEGEDLYHDNFLDDYRRMDEHDQYESLGLDDSLEDERDLDQIMEDRRAAEMELETRDAQLTRRKLPELLHDHDSEDDNYRPSKRSRADFRPPAGARSYDDIDGMQSSPGRSQRENSRDDVPMTDHSVDDQYEDEDDDENEHEMYRVQGPLREHVTMDAVRRFIGKKFKKFLETYVNPKSGNGELEYMRLINEMVLGEHLLHSNRCSLEIDYKQFIFVHPNIAIWLADAPQPVLEVMEDVAKKVVFDIHPNYKNIHQKIYVRINNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFSTVVEANYITKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDSVTDEMLARFVVDSHFKSQPKGANLDDKSINESQEDSQDSARPLDPEVLPQDLLRKYITYSKLNVFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTHINVKLEDLQSKAQDHEIYDLKPFFTSSHFSNANFVLDEEHGLIRHHLAR 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27181452 27188328 + ClCG10G013030.1 Cla10g01241 282900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01241 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 524 848 IPR027417 -
Cla10g01241 951 MobiDBLite consensus disorder prediction 737 751 - -
Cla10g01241 951 Pfam Mini-chromosome maintenance protein 2 45 200 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cla10g01241 951 SMART mcm 331 846 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cla10g01241 951 PRINTS Mini-chromosome maintenance (MCM) protein family signature 643 656 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla10g01241 951 PRINTS Mini-chromosome maintenance (MCM) protein family signature 667 679 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla10g01241 951 PRINTS Mini-chromosome maintenance (MCM) protein family signature 615 629 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla10g01241 951 PRINTS Mini-chromosome maintenance (MCM) protein family signature 694 702 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla10g01241 951 PRINTS Mini-chromosome maintenance (MCM) protein family signature 555 570 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla10g01241 951 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 367 379 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cla10g01241 951 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 463 474 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cla10g01241 951 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 344 361 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cla10g01241 951 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 478 489 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cla10g01241 951 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 402 416 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Cla10g01241 951 PANTHER DNA HELICASE 145 944 - -
Cla10g01241 951 MobiDBLite consensus disorder prediction 116 210 - -
Cla10g01241 951 Gene3D - 335 460 IPR012340 -
Cla10g01241 951 MobiDBLite consensus disorder prediction 116 159 - -
Cla10g01241 951 Gene3D - 362 412 - -
Cla10g01241 951 Gene3D - 221 331 - -
Cla10g01241 951 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 145 944 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cla10g01241 951 MobiDBLite consensus disorder prediction 1 69 - -
Cla10g01241 951 Pfam MCM P-loop domain 502 724 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cla10g01241 951 Pfam MCM OB domain 334 461 IPR033762 -
Cla10g01241 951 Gene3D - 494 868 IPR027417 -
Cla10g01241 951 Pfam MCM AAA-lid domain 761 845 IPR041562 -
Cla10g01241 951 ProSitePatterns MCM family signature. 623 631 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cla10g01241 951 CDD MCM2 517 844 - -
Cla10g01241 951 Pfam MCM N-terminal domain 229 328 IPR027925 -
Cla10g01241 951 MobiDBLite consensus disorder prediction 176 191 - -
Cla10g01241 951 MobiDBLite consensus disorder prediction 7 43 - -
Cla10g01241 951 SUPERFAMILY Nucleic acid-binding proteins 230 483 IPR012340 -
Cla10g01241 951 MobiDBLite consensus disorder prediction 729 754 - -
Cla10g01241 951 ProSiteProfiles MCM family domain profile. 514 720 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00472 Cla-Chr9:4509210 Cla10g01241 Cla-Chr10:27181452 6.40E-103 dispersed
Cla09g01540 Cla-Chr9:30479795 Cla10g01241 Cla-Chr10:27181452 1.24E-80 dispersed
Cla10g01241 Cla-Chr10:27181452 Cla11g00330 Cla-Chr11:3754092 2.14E-100 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01241 K02540 - csv:101219546 1754.95