Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01256 ATGATGGCTTTTAGCTTCGTTTCTGCATGGAACAAGAGGCGTAGACAAAAAAAGTCTTCTCAATTAGAACATCAAATTGCTAACCCTTGGATCTATAGACCAGTTGAGTTGTGGCAACTTGAGGATCAAACCCTTCAAAGACCTTCCAAAAGACACCATGGATCCGCTGTCTTCACGCTTCGGGAAATGGAAGACGCTACGTGTTCTTTTAGCGATGCTAACTTGCTCGGAAAAGGTGGTTTCGGTCGAGTTTACCGTGGCACCTTACAATCTGGAGAGGTTGTAGCAATAAAGAAAATGGAGATGCCAGCATTTAAGGAAGCAGAAGGAGAGCGTGAGTTTCGAGTGGAAGTTGACATTCTCAGCAGATTGGACCATCCAAATCTTGTTTCCTTGATTGGTTATTGTGCTGATGGGAAGCATCGGTTTCTAGTTTATGAATATATGCATAAAGGAAACTTGCAAGATCATTTAAATGGAATTGGAGAAGCAAAGATGGATTGGGAAAGGAGGCTAAAAGTGGCACTTGGAGCAGCAAAGGGACTTGCCTATCTTCATTCAAGTTCAGCTGCTGGGATGCCAATTGTCCATAGAGATTTCAAATCCACAAACATTCTTCTTGACTCCAACTTGGATGCAAAGATATCGGACTTTGGGCTTGCAAAGTTTATGCCGGAAGGACAAGAATCACATGTGACTGCAAGAGTCCTCGGCACATTTGGATACTTTGACCCTGAGTATACCTCCACAGGAAAACTAAGCTTGCAAAGTGATGTATATGCATTTGGAGTGGTTCTTCTTGAGCTGCTGACGGGCCGCCGAGCAGTGGACTTGAACCAAGGCCCAAATGACCAAAACCTTGTCGTACAGGTACGGCATATATTGAATGATCGAAAAAAGTTGCGTAAGGTTATAGATCCAGAAATGAGTCGAAATTCATATACAATGGAATCCATTGCCATCTTTGCAAACTTGGCTTCACGTTGCGTCCGAACAGAAAGTAGTGAAAGGCCAACAATGGCAGAATGTGTAAGGGAGCTCCAAATGATTATCTACACAAAGTTACAAATTCGCAAGGCCTAA 1083 43.12 MMAFSFVSAWNKRRRQKKSSQLEHQIANPWIYRPVELWQLEDQTLQRPSKRHHGSAVFTLREMEDATCSFSDANLLGKGGFGRVYRGTLQSGEVVAIKKMEMPAFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHKGNLQDHLNGIGEAKMDWERRLKVALGAAKGLAYLHSSSAAGMPIVHRDFKSTNILLDSNLDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLSLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVVQVRHILNDRKKLRKVIDPEMSRNSYTMESIAIFANLASRCVRTESSERPTMAECVRELQMIIYTKLQIRKA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27421745 27426685 + ClCG10G013190.2 Cla10g01256 282915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01256 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Cla10g01256 360 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Cla10g01256 360 Gene3D Transferase(Phosphotransferase) domain 1 149 358 - -
Cla10g01256 360 CDD STKc_IRAK 76 348 - -
Cla10g01256 360 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL28-RELATED 1 357 - -
Cla10g01256 360 PIRSF ILK 40 359 - -
Cla10g01256 360 SUPERFAMILY Protein kinase-like (PK-like) 57 353 IPR011009 -
Cla10g01256 360 ProSiteProfiles Protein kinase domain profile. 70 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01256 360 PANTHER OS01G0750732 PROTEIN 1 357 - -
Cla10g01256 360 Gene3D Phosphorylase Kinase; domain 1 36 148 - -
Cla10g01256 360 Pfam Protein kinase domain 72 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01256 Cla-Chr10:27421745 Cla10g00517 Cla-Chr10:6839670 2.21E-94 dispersed
Cla10g01256 Cla-Chr10:27421745 Cla05g00626 Cla-Chr5:5770602 1.47E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80863 PF00069 Pkinase 9.90E-51 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01256 - - cmo:103502985 655.981