Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01257 ATGGGGGCGATTTTGGCGGTTTCAGTCGTTCAAACGCTGCTATTTTTGGCTTTCTTCTACTTGGCGGCTTCCTATACTGATTCCCACGATTCGTCGGTTCTTCAATCCTTGAAAGATGGATGGCAAAATACACCACCAAGCTGGGGAACAACAAATGATCCATGTGGAGCTCCCTGGGAAGGAGTGATTTGCAAGAACTCAAGAGTAGTTGCATTGAAATTATCAAGTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTGAGATCATTGGACCTTGCAGCCAATCGAGACCTCATTGGTTCAATCTCTTCAGCTCTAGGGAGTTTGTTGAAATTAGAGACCTTGATCCTTTCGACGTGTGGATTTAGTGGCAATATTCCGGAAGAATTGGGCAATCTTACTGAGTTAACCTTCTTGTCTTTATATTCCAACAACTTCACTGGTACTATACCGGCAACTCTGGGAAAACTCTCCAATCTATACTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGCTCTCCCAGTTTCCACTTCCGGATCTTCGGGTTTAGATCGACTTTTTAAGGCTAAACATTTTCATTTCAGCAAAAACCAGTTATCAGGTACCATTCCACCTGAACTTTTTCACTCTGAGATGGTATTATTACACATATTATTTGATGGAAATAATTTTTCTGGGAGTATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGAAATTCTTTAACAGGAAGTGTCCCATCCACTCTAAGCAACCTAATAAATGTGAATGAATTGCATTTAGCCAACAATAAGCTGACAGGTCCACTACCAAACTTAACTCAAATGAGTTCACTAAATTACGTGGATCTTAGTAACAACTCATTTAGCTCATCAATAGCTCCGGAATGGTTCTCAAATCTACAATCTCTCACCACTCTTATTGTTGAATATGGATCAATACGGGGAAATCTGCCAGAAGGAATCTTTAGCTTACCACGTATACAACAAGTAAAACTGAAGAATAATGCATTTAGTGGGACATTATATATGGGTGACAGCATTGGCCAACTGTTGCAGCTAGTCGATTTGCAAAATAACAATATTTCCTCAGTTACCTCTTCGGGATATACTAACGCTTTGATGCTGACAGGAAATCCTGTGTGTGATGCTAATTTCCTCTCAAATACAAACTATTGCCAGCTTCAACAGCAACAAGCAAAACCTTATACTACCAGCCTTGTCAACTGTGGCAGTAAGTCATGTCCTGATGATGAGAAGCTGAACCCTCGGAGTTGTGAGTGTGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCCTCTTTCCGGGAATTGTCCAATATAACTCTGTTTCACTTATTGGAAATGAGCCTTTTGGAAAAATTCAACCTAACGGCTTCTATTCGAAACCCTTTCTTTAATGCTGACGATTATCTTCAGATACAGCTTGCACTTTTTCCAGCCAATGATAAGTATTTCAACAGGGAAGACATTCAGTGGATTGGTTTTGATTTGCACAGTCAAAATTACAAACCTCCCGACAAGTTTGGGCCATATTACTTCTTTGCGTCTCCTTATCCTTTTTCAGACATCGATGAGGGATCAACTTCAACCAACACTGGGGTGATAATTGGAATAGCTGTTGGCTGTGCCTTTCTTGTTCTCTGCCTCATTGGAATTGGAACATATGCAATTCAACAAAAGAGACGTGCAGAAAAGGCCAAGCCAAATGCTTTCTGGGTGCCAAGTGGAAACGATAGCGGAAGCGCACCACAATTAAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAGATAATTTCTCCACCAGTAATGTGATAGGATCGGGAGGATTTGGCATGAGTTGTTTTTGCATTGGCATTGCCGCATTGTCATTGGTACAGGTATACAGAGGAACACTGGTGGATGGAAAAGTAGTTGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTGGTCTCGAGTTCAAGACGGAAATTGAGCTGCTTTCACGAGTTCATCACAAGAATCTTCTAGGCCTAGTGGGATTTTGTTCCGAACAAGGAGAACAGATTCTTGTTTATGAGTTCATGCCTAATGGGACACTTAGACAGAGCCTAGCTGGAAAATGTGGTATTTATCTTGATTGGAAGAGAAGGCTTCGTATCGCGCTGGGGTCGGCCAGAGGACTGACTTACTTACACGAGCTTGCTAATCCTCCCATAATTCATAGAGATGTTAAGTCCACCAACATTTTACTAGATGAACGTCTAAATGCAAAGGTTGCTGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGTAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTATTTGGATCCTGAATATTACATGAGTCAACAATTGACGGAGAAAAGTGACGTGTACAGTTTTGGAGTAGTTATGTTGGAATTACTAACTGCTAAGCTGCCAATTGAAAAAGGGAAGTACATAGTTCGCGAGGTACGTATGTCGATGAATAAGAGTGATGAAGAATATTACGGTTTAAAGCACATAATAGATGCAGCCATAATCGATAATACGACGAATCTTATCGGGTTTGGAAAGTTCTTAGAGTTAGCCATGCAATGTGTTGAAGAAGCAGCCGCAGACCGGCCCACAATGAGTGAAGTGGTTAAAACAATTGAAAACATTTTGCAGAATGATGGAATAAATACAACCTCAACATCAGCATCCTCATCTGCCACAGACTTCGGGACTTCCAAAACTGCTTCTAGACATCCTTATAATGATGCTTTACAGAAAGAGAGTGTCAACAAGAACAGCCAATGA 2877 41.29 MGAILAVSVVQTLLFLAFFYLAASYTDSHDSSVLQSLKDGWQNTPPSWGTTNDPCGAPWEGVICKNSRVVALKLSSMGLKGKLGGDIGGLTELRSLDLAANRDLIGSISSALGSLLKLETLILSTCGFSGNIPEELGNLTELTFLSLYSNNFTGTIPATLGKLSNLYWLDLADNQLTGALPVSTSGSSGLDRLFKAKHFHFSKNQLSGTIPPELFHSEMVLLHILFDGNNFSGSIPPTLGLVKTLEVLRLDRNSLTGSVPSTLSNLINVNELHLANNKLTGPLPNLTQMSSLNYVDLSNNSFSSSIAPEWFSNLQSLTTLIVEYGSIRGNLPEGIFSLPRIQQVKLKNNAFSGTLYMGDSIGQLLQLVDLQNNNISSVTSSGYTNALMLTGNPVCDANFLSNTNYCQLQQQQAKPYTTSLVNCGSKSCPDDEKLNPRSCECAYPYEGTLYFRGPSFRELSNITLFHLLEMSLLEKFNLTASIRNPFFNADDYLQIQLALFPANDKYFNREDIQWIGFDLHSQNYKPPDKFGPYYFFASPYPFSDIDEGSTSTNTGVIIGIAVGCAFLVLCLIGIGTYAIQQKRRAEKAKPNAFWVPSGNDSGSAPQLKGARWFSYDELKKCTDNFSTSNVIGSGGFGMSCFCIGIAALSLVQVYRGTLVDGKVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCSEQGEQILVYEFMPNGTLRQSLAGKCGIYLDWKRRLRIALGSARGLTYLHELANPPIIHRDVKSTNILLDERLNAKVADFGLSKLVSDSVKGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYIVREVRMSMNKSDEEYYGLKHIIDAAIIDNTTNLIGFGKFLELAMQCVEEAAADRPTMSEVVKTIENILQNDGINTTSTSASSSATDFGTSKTASRHPYNDALQKESVNKNSQ 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27428139 27435314 - ClCG10G013200.2 Cla10g01257 282916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01257 958 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 943 - -
Cla10g01257 958 PANTHER LRR RECEPTOR-LIKE KINASE 11 943 - -
Cla10g01257 958 Gene3D Ribonuclease Inhibitor 27 221 IPR032675 -
Cla10g01257 958 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Cla10g01257 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672|GO:0006468
Cla10g01257 958 MobiDBLite consensus disorder prediction 921 958 - -
Cla10g01257 958 Gene3D Ribonuclease Inhibitor 222 285 IPR032675 -
Cla10g01257 958 ProSiteProfiles Protein kinase domain profile. 625 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01257 958 SUPERFAMILY Protein kinase-like (PK-like) 610 925 IPR011009 -
Cla10g01257 958 SMART serkin_6 625 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01257 958 Gene3D Transferase(Phosphotransferase) domain 1 715 940 - -
Cla10g01257 958 SMART LRR_typ_2 289 313 IPR003591 -
Cla10g01257 958 SMART LRR_typ_2 139 162 IPR003591 -
Cla10g01257 958 SMART LRR_typ_2 163 187 IPR003591 -
Cla10g01257 958 SMART LRR_typ_2 361 385 IPR003591 -
Cla10g01257 958 SMART LRR_typ_2 90 115 IPR003591 -
Cla10g01257 958 SMART LRR_typ_2 242 265 IPR003591 -
Cla10g01257 958 SMART LRR_typ_2 314 338 IPR003591 -
Cla10g01257 958 SUPERFAMILY L domain-like 39 354 - -
Cla10g01257 958 Gene3D Phosphorylase Kinase; domain 1 597 714 - -
Cla10g01257 958 Pfam Protein tyrosine and serine/threonine kinase 652 909 IPR001245 GO:0004672|GO:0006468
Cla10g01257 958 Gene3D Ribonuclease Inhibitor 286 430 IPR032675 -
Cla10g01257 958 CDD STKc_IRAK 631 913 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00002 Cla-Chr2:51609 Cla10g01257 Cla-Chr10:27428139 0 dispersed
Cla04g00632 Cla-Chr4:20628995 Cla10g01257 Cla-Chr10:27428139 4.27E-163 dispersed
Cla09g02204 Cla-Chr9:39646954 Cla10g01257 Cla-Chr10:27428139 3.97E-28 dispersed
Cla10g01257 Cla-Chr10:27428139 Cla01g01760 Cla-Chr1:32501800 3.84E-31 dispersed
Cla10g01257 Cla-Chr10:27428139 Cla10g02161 Cla-Chr10:37221640 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80864 PF07714 PK_Tyr_Ser-Thr 5.60E-41 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01257 - - bhj:120091485 1660.2