Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01281 ATGGAGTTGGTAAGCGAGAAGAGGGATTTTGATTCTTCAAACGACAACAAGAAGCTCAACTCTGCTCAACCACTTCTTGATTCTTCTTATCAACCCTCAGCCGCTGATGACACAAATGCCAAAGAAGCTGAAGAGTTAAGTGAACGCGTAGCTCGAGACCTCAAAGATGGCCTTCATCCCCTAAAGGAGCTGTTAGCTCTTAGTTGGTTAGACAATTTGTTGGTTTATGAATTCAAATTTGGAAGAGTTTTGTCTCTGCATCACATGAATGGATTCTCCTATGAGTTCCTTGCATCATGGCATTTTGGGGTCATTTTCGCAGGTGCTCACAAGTTTGCATTTTGGTACACTCGTCGAACACCTGGAGTTCGGACTCAAACGTCATATGAGGACAACATAAAAAAGATCGTGGACTTCAGCTCGGTTGAAGGTTTTTGGGTAAGCTATTGCCATTTGGCTCGTCCTTCTTCTTTGCCAAGCCCAACAGATCTGCATCTCTTTAAGGAAGGAATCCGTCCACTCTGGGAGGTAATACGTCAAGGAATGCTGCATGCATATTTTTCATTAGGCTTACTAGGGAGTAGACTTCCTGTTCCTTTGTGTAACTTAGATATGGTATTGGAATTTTGTATTTCTATGCTCAGTGGGGAGTCTAATTCCTATTTCAATGCAAATGCAATTATTGTTCAGGATTCTGCGAACTGCAATGGTGGAAAGTGGATAATACGATTTAAGAAAGTTGTATCTGGGCGATTTTGGGAAGATTTGGTTCTTGCATTAGTGGGCGACCAACTTGATTTTGGCGATAACATATGTGGTGCCGTGCTTAGCATTCGTTTCAACGAGGATATTTTGAGCGTCTGGAACCGCAATGCATCTGATCATCAGGCGGTGATGGGTCTGCGAGATTCAATCAAAAGGCACTTAAAGCTCCCGCATGGGTATGTAATGGAATACAAACCCCACGATGCGTCTCTGCGTGATAACTCGTCATACAGAAACACATGGTTGCGAGGTGACTCGTCGGTTGGTGTTGCACATGATGCTTTCAACACGTTTTTCAGCGAAACTGGTTCAGGCAAGCATGTTCCTAGAGCAATATTTGTGGATCTGGAACCAACTGTTATCGATGAAGTAAGGACTGGGACATACCGACAGCTTTTCCATCCGGAACAGCTCATATCTGGTAAAGAAGATGCTGCAAATAATTTTGCTAGAGGACATTATACAGTGGGTAGGGAAATAGTCGATCTATGCCTTGACCGAGTGCGAAAATTAGCCGACAATTGCACTGGTTTGCAAGGGTTCTTAGTATTTAATGCTGTTGGTGGTGGCACTGGATCTGGATTGGGGTCATTACTTTTGGAACGCTTGTCTGTGGATTATGGAAAGAAGTCAAAGCTTGGATTTTCCATATATCCTTCTCCACAGGTATCTACTGCTGTGGTAGAACCCTACAACAGTGTGCTTTCCACTCATTCTCTGCTAGAACACACAGATGTCGCTGTTCTTCTGGACAATGAAGCCATTTATGATATCTGTAGGAGATCGTTGGATATTGAAAGACCAACTTACACCAACTTGAACCGCTTGATATCCCAAGTCATCTCCTCGTTAACTACTTCCTTGCGGTTTGATGGTGCTATCAACGTGGATATAACCGAGTTTCAAACTAACCTTGTACCTTATCCACGTATTCATTTCATGCTCTCTTCTTATGCTCCTGTGATTTCTTCCGCAAAAGCTTACCATGAGCAGCTATCTGTCCCTGAAATCACCAATGCTGTATTTGATCCCTCAAGCATGATGGTCAAGTGTGACCCGAGGCACGGAAAGTACATGGCATGCTGTTTGATGTATAGAGGAGATGTTGTACCCAAGGATGTGAATGCTGCTGTTGCTACCATCAAAACGAAGCGAACAGTTCAATTTGTTGACTGGTGTCCTACTGGCTTCAAATGTGGTATTAACTATCAACCCCCAAGCGTTGTTCCTGGGGGCGATCTCGCCAAGGTGCAGCGGGCTGTCTGTATGATAAGCAACAGCACAGCCGTGGCCGAAGTCTTTTCAAGAATTGACCACAAATTCGATCTTATGTATGCTAAGCGCGCATTTGTCCATTGGTACGTGGGGGAGGGCATGGAGGAAGGCGAATTCTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAGAAGGACTACGAGGAAGTCGGGGCCGAAGATGTTGATGAAGAGGAGGAAGGGGAAGATTATTGA 2253 44.47 MELVSEKRDFDSSNDNKKLNSAQPLLDSSYQPSAADDTNAKEAEELSERVARDLKDGLHPLKELLALSWLDNLLVYEFKFGRVLSLHHMNGFSYEFLASWHFGVIFAGAHKFAFWYTRRTPGVRTQTSYEDNIKKIVDFSSVEGFWVSYCHLARPSSLPSPTDLHLFKEGIRPLWEVIRQGMLHAYFSLGLLGSRLPVPLCNLDMVLEFCISMLSGESNSYFNANAIIVQDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDFGDNICGAVLSIRFNEDILSVWNRNASDHQAVMGLRDSIKRHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRGDSSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27640563 27657096 + ClCG10G013430.2 Cla10g01281 282940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01281 750 Pfam Tubulin C-terminal domain 564 693 IPR018316 -
Cla10g01281 750 Pfam Eukaryotic initiation factor 4E 110 176 IPR001040 GO:0003723|GO:0003743|GO:0006413
Cla10g01281 750 Pfam Eukaryotic initiation factor 4E 230 319 IPR001040 GO:0003723|GO:0003743|GO:0006413
Cla10g01281 750 PRINTS Alpha-tubulin signature 515 527 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Alpha-tubulin signature 622 643 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Alpha-tubulin signature 648 661 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Alpha-tubulin signature 346 359 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Alpha-tubulin signature 449 461 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Alpha-tubulin signature 389 402 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Alpha-tubulin signature 686 702 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Alpha-tubulin signature 723 739 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Alpha-tubulin signature 462 473 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Alpha-tubulin signature 575 590 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Alpha-tubulin signature 661 680 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Alpha-tubulin signature 421 429 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 MobiDBLite consensus disorder prediction 1 15 - -
Cla10g01281 750 CDD alpha_tubulin 340 736 - -
Cla10g01281 750 MobiDBLite consensus disorder prediction 1 42 - -
Cla10g01281 750 Coils Coil 719 746 - -
Cla10g01281 750 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 443 449 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cla10g01281 750 SUPERFAMILY eIF4e-like 231 335 IPR023398 -
Cla10g01281 750 Gene3D Tubulin/FtsZ, GTPase domain 327 569 IPR036525 -
Cla10g01281 750 PANTHER TUBULIN 333 747 IPR000217 GO:0005874|GO:0007017
Cla10g01281 750 SUPERFAMILY Tubulin nucleotide-binding domain-like 340 545 IPR036525 -
Cla10g01281 750 SMART Tubulin_C_4 549 694 IPR018316 -
Cla10g01281 750 Gene3D RNA Cap, Translation Initiation Factor Eif4e 107 181 IPR023398 -
Cla10g01281 750 Gene3D RNA Cap, Translation Initiation Factor Eif4e 212 326 IPR023398 -
Cla10g01281 750 SUPERFAMILY Tubulin C-terminal domain-like 547 737 IPR008280 -
Cla10g01281 750 PANTHER TUBULIN ALPHA-1 CHAIN 333 747 - -
Cla10g01281 750 Gene3D Helix hairpin bin 685 737 IPR023123 -
Cla10g01281 750 SMART Tubulin_4 350 547 IPR003008 GO:0005525
Cla10g01281 750 Pfam Tubulin/FtsZ family, GTPase domain 341 514 IPR003008 GO:0005525
Cla10g01281 750 PRINTS Tubulin signature 409 433 IPR000217 GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Tubulin signature 435 453 IPR000217 GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Tubulin signature 479 492 IPR000217 GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Tubulin signature 454 475 IPR000217 GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Tubulin signature 681 709 IPR000217 GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Tubulin signature 493 513 IPR000217 GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Tubulin signature 354 373 IPR000217 GO:0005874|GO:0007017
Cla10g01281 750 PRINTS Tubulin signature 396 407 IPR000217 GO:0005874|GO:0007017
Cla10g01281 750 SUPERFAMILY eIF4e-like 110 176 IPR023398 -
Cla10g01281 750 MobiDBLite consensus disorder prediction 16 36 - -
Cla10g01281 750 Gene3D - 570 684 IPR037103 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00698 Cla-Chr2:8209788 Cla10g01281 Cla-Chr10:27640563 0 dispersed
Cla02g02357 Cla-Chr2:38616508 Cla10g01281 Cla-Chr10:27640563 0 dispersed
Cla06g00693 Cla-Chr6:8835835 Cla10g01281 Cla-Chr10:27640563 4.67E-12 dispersed
Cla10g01281 Cla-Chr10:27640563 Cla08g01419 Cla-Chr8:27071877 4.38E-112 dispersed
Cla10g01281 Cla-Chr10:27640563 Cla10g00961 Cla-Chr10:22603977 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01281 K07374 - csv:101204049 772.696