Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g01281 | ATGGAGTTGGTAAGCGAGAAGAGGGATTTTGATTCTTCAAACGACAACAAGAAGCTCAACTCTGCTCAACCACTTCTTGATTCTTCTTATCAACCCTCAGCCGCTGATGACACAAATGCCAAAGAAGCTGAAGAGTTAAGTGAACGCGTAGCTCGAGACCTCAAAGATGGCCTTCATCCCCTAAAGGAGCTGTTAGCTCTTAGTTGGTTAGACAATTTGTTGGTTTATGAATTCAAATTTGGAAGAGTTTTGTCTCTGCATCACATGAATGGATTCTCCTATGAGTTCCTTGCATCATGGCATTTTGGGGTCATTTTCGCAGGTGCTCACAAGTTTGCATTTTGGTACACTCGTCGAACACCTGGAGTTCGGACTCAAACGTCATATGAGGACAACATAAAAAAGATCGTGGACTTCAGCTCGGTTGAAGGTTTTTGGGTAAGCTATTGCCATTTGGCTCGTCCTTCTTCTTTGCCAAGCCCAACAGATCTGCATCTCTTTAAGGAAGGAATCCGTCCACTCTGGGAGGTAATACGTCAAGGAATGCTGCATGCATATTTTTCATTAGGCTTACTAGGGAGTAGACTTCCTGTTCCTTTGTGTAACTTAGATATGGTATTGGAATTTTGTATTTCTATGCTCAGTGGGGAGTCTAATTCCTATTTCAATGCAAATGCAATTATTGTTCAGGATTCTGCGAACTGCAATGGTGGAAAGTGGATAATACGATTTAAGAAAGTTGTATCTGGGCGATTTTGGGAAGATTTGGTTCTTGCATTAGTGGGCGACCAACTTGATTTTGGCGATAACATATGTGGTGCCGTGCTTAGCATTCGTTTCAACGAGGATATTTTGAGCGTCTGGAACCGCAATGCATCTGATCATCAGGCGGTGATGGGTCTGCGAGATTCAATCAAAAGGCACTTAAAGCTCCCGCATGGGTATGTAATGGAATACAAACCCCACGATGCGTCTCTGCGTGATAACTCGTCATACAGAAACACATGGTTGCGAGGTGACTCGTCGGTTGGTGTTGCACATGATGCTTTCAACACGTTTTTCAGCGAAACTGGTTCAGGCAAGCATGTTCCTAGAGCAATATTTGTGGATCTGGAACCAACTGTTATCGATGAAGTAAGGACTGGGACATACCGACAGCTTTTCCATCCGGAACAGCTCATATCTGGTAAAGAAGATGCTGCAAATAATTTTGCTAGAGGACATTATACAGTGGGTAGGGAAATAGTCGATCTATGCCTTGACCGAGTGCGAAAATTAGCCGACAATTGCACTGGTTTGCAAGGGTTCTTAGTATTTAATGCTGTTGGTGGTGGCACTGGATCTGGATTGGGGTCATTACTTTTGGAACGCTTGTCTGTGGATTATGGAAAGAAGTCAAAGCTTGGATTTTCCATATATCCTTCTCCACAGGTATCTACTGCTGTGGTAGAACCCTACAACAGTGTGCTTTCCACTCATTCTCTGCTAGAACACACAGATGTCGCTGTTCTTCTGGACAATGAAGCCATTTATGATATCTGTAGGAGATCGTTGGATATTGAAAGACCAACTTACACCAACTTGAACCGCTTGATATCCCAAGTCATCTCCTCGTTAACTACTTCCTTGCGGTTTGATGGTGCTATCAACGTGGATATAACCGAGTTTCAAACTAACCTTGTACCTTATCCACGTATTCATTTCATGCTCTCTTCTTATGCTCCTGTGATTTCTTCCGCAAAAGCTTACCATGAGCAGCTATCTGTCCCTGAAATCACCAATGCTGTATTTGATCCCTCAAGCATGATGGTCAAGTGTGACCCGAGGCACGGAAAGTACATGGCATGCTGTTTGATGTATAGAGGAGATGTTGTACCCAAGGATGTGAATGCTGCTGTTGCTACCATCAAAACGAAGCGAACAGTTCAATTTGTTGACTGGTGTCCTACTGGCTTCAAATGTGGTATTAACTATCAACCCCCAAGCGTTGTTCCTGGGGGCGATCTCGCCAAGGTGCAGCGGGCTGTCTGTATGATAAGCAACAGCACAGCCGTGGCCGAAGTCTTTTCAAGAATTGACCACAAATTCGATCTTATGTATGCTAAGCGCGCATTTGTCCATTGGTACGTGGGGGAGGGCATGGAGGAAGGCGAATTCTCTGAAGCCCGTGAGGATCTTGCTGCTCTAGAGAAGGACTACGAGGAAGTCGGGGCCGAAGATGTTGATGAAGAGGAGGAAGGGGAAGATTATTGA | 2253 | 44.47 | MELVSEKRDFDSSNDNKKLNSAQPLLDSSYQPSAADDTNAKEAEELSERVARDLKDGLHPLKELLALSWLDNLLVYEFKFGRVLSLHHMNGFSYEFLASWHFGVIFAGAHKFAFWYTRRTPGVRTQTSYEDNIKKIVDFSSVEGFWVSYCHLARPSSLPSPTDLHLFKEGIRPLWEVIRQGMLHAYFSLGLLGSRLPVPLCNLDMVLEFCISMLSGESNSYFNANAIIVQDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDFGDNICGAVLSIRFNEDILSVWNRNASDHQAVMGLRDSIKRHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRGDSSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGEDY | 750 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 27640563 | 27657096 | + | ClCG10G013430.2 | Cla10g01281 | 282940 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g01281 | 750 | Pfam | Tubulin C-terminal domain | 564 | 693 | IPR018316 | - | |
Cla10g01281 | 750 | Pfam | Eukaryotic initiation factor 4E | 110 | 176 | IPR001040 | GO:0003723|GO:0003743|GO:0006413 | |
Cla10g01281 | 750 | Pfam | Eukaryotic initiation factor 4E | 230 | 319 | IPR001040 | GO:0003723|GO:0003743|GO:0006413 | |
Cla10g01281 | 750 | PRINTS | Alpha-tubulin signature | 515 | 527 | IPR002452 | GO:0005200|GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Alpha-tubulin signature | 622 | 643 | IPR002452 | GO:0005200|GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Alpha-tubulin signature | 648 | 661 | IPR002452 | GO:0005200|GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Alpha-tubulin signature | 346 | 359 | IPR002452 | GO:0005200|GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Alpha-tubulin signature | 449 | 461 | IPR002452 | GO:0005200|GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Alpha-tubulin signature | 389 | 402 | IPR002452 | GO:0005200|GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Alpha-tubulin signature | 686 | 702 | IPR002452 | GO:0005200|GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Alpha-tubulin signature | 723 | 739 | IPR002452 | GO:0005200|GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Alpha-tubulin signature | 462 | 473 | IPR002452 | GO:0005200|GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Alpha-tubulin signature | 575 | 590 | IPR002452 | GO:0005200|GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Alpha-tubulin signature | 661 | 680 | IPR002452 | GO:0005200|GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Alpha-tubulin signature | 421 | 429 | IPR002452 | GO:0005200|GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cla10g01281 | 750 | CDD | alpha_tubulin | 340 | 736 | - | - | |
Cla10g01281 | 750 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cla10g01281 | 750 | Coils | Coil | 719 | 746 | - | - | |
Cla10g01281 | 750 | ProSitePatterns | Tubulin subunits alpha, beta, and gamma signature. | 443 | 449 | IPR017975 | GO:0005525|GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | SUPERFAMILY | eIF4e-like | 231 | 335 | IPR023398 | - | |
Cla10g01281 | 750 | Gene3D | Tubulin/FtsZ, GTPase domain | 327 | 569 | IPR036525 | - | |
Cla10g01281 | 750 | PANTHER | TUBULIN | 333 | 747 | IPR000217 | GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | SUPERFAMILY | Tubulin nucleotide-binding domain-like | 340 | 545 | IPR036525 | - | |
Cla10g01281 | 750 | SMART | Tubulin_C_4 | 549 | 694 | IPR018316 | - | |
Cla10g01281 | 750 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 107 | 181 | IPR023398 | - | |
Cla10g01281 | 750 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 212 | 326 | IPR023398 | - | |
Cla10g01281 | 750 | SUPERFAMILY | Tubulin C-terminal domain-like | 547 | 737 | IPR008280 | - | |
Cla10g01281 | 750 | PANTHER | TUBULIN ALPHA-1 CHAIN | 333 | 747 | - | - | |
Cla10g01281 | 750 | Gene3D | Helix hairpin bin | 685 | 737 | IPR023123 | - | |
Cla10g01281 | 750 | SMART | Tubulin_4 | 350 | 547 | IPR003008 | GO:0005525 | |
Cla10g01281 | 750 | Pfam | Tubulin/FtsZ family, GTPase domain | 341 | 514 | IPR003008 | GO:0005525 | |
Cla10g01281 | 750 | PRINTS | Tubulin signature | 409 | 433 | IPR000217 | GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Tubulin signature | 435 | 453 | IPR000217 | GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Tubulin signature | 479 | 492 | IPR000217 | GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Tubulin signature | 454 | 475 | IPR000217 | GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Tubulin signature | 681 | 709 | IPR000217 | GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Tubulin signature | 493 | 513 | IPR000217 | GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Tubulin signature | 354 | 373 | IPR000217 | GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | PRINTS | Tubulin signature | 396 | 407 | IPR000217 | GO:0005874|GO:0007017 | |
Cla10g01281 | 750 | SUPERFAMILY | eIF4e-like | 110 | 176 | IPR023398 | - | |
Cla10g01281 | 750 | MobiDBLite | consensus disorder prediction | 16 | 36 | - | - | |
Cla10g01281 | 750 | Gene3D | - | 570 | 684 | IPR037103 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g00698 | Cla-Chr2:8209788 | Cla10g01281 | Cla-Chr10:27640563 | 0 | dispersed | |
Cla02g02357 | Cla-Chr2:38616508 | Cla10g01281 | Cla-Chr10:27640563 | 0 | dispersed | |
Cla06g00693 | Cla-Chr6:8835835 | Cla10g01281 | Cla-Chr10:27640563 | 4.67E-12 | dispersed | |
Cla10g01281 | Cla-Chr10:27640563 | Cla08g01419 | Cla-Chr8:27071877 | 4.38E-112 | dispersed | |
Cla10g01281 | Cla-Chr10:27640563 | Cla10g00961 | Cla-Chr10:22603977 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g01281 | K07374 | - | csv:101204049 | 772.696 |