Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01288 ATGCTCGGGAAGGTTTTTAAAGCTCAATTTTCTTGGTTGAAAACAGGAAACTACTGGGCGAAGTCAGCTGGAGGCTGCCCAAAGTGGCTGCTCACGCCTACACACCCAGCCTGCCCACGCCTGTCGCCAGTGCCTCACACCCGCACACCCTGTGCGGCACACACCCCACATGCCAGCGCCACGCTTTGCCCACGCCCCACACGCCAGCGCCCCACGCCCCTGCCCACGCCTTGCCAGCACCCCTCGCCCACCTGCTACCCACCAAGGGTGCCCACAGCCATCTTGGGTATGGATGTCGATGGAGGCGGTAAGCGCGTTTTTCAGAGGCTGGGCGCGCCTTCTGGAGATTCTAGGAATCAGAAGGTCTGTTACCATTGGAGGGCGGGTAAATGTAATCGCTATCCATGTCCTTTCCTTCACCGTGAGTTAAATGCCCCTCCACATGCGGCTTCGAATGGAGCTGTTAATACTGCCTCGAAGAGGGGTCATGGATTCGCCTCTGATGATTCGACTGTTTCTGTTCCCCGACGGAGTCCCAATTTTAGCGGCGGCTCGACGTGGGGACGAGTTCATGGTGGTGGTAATAGAATAATTAGAAAGACAGAGAAGCTTTGTAATTTTTGGGTTCAGGGGAACTGTGGTTATGGTGATAAGTGTAGATACTTACATTCTTGGAGTTTGGGGGAAAGTTTTTCGCATCTAACGCAGCTTGATGGGCATCAGAAGGCAAGTGATATATGTCTAAAACAAACCCGAATTCCCATTTATGCGGAGAATTGTGATTGTCTTGTTGTAACTGGGATCGCTTTTCCATCTGGTTCTGATAAGCTTTATACTGGTAGTAAAGATGAGACCGTCAGGGTCTGGGACTGCCAGTCCGGGCAGTGCATGGCTGTTATTAATCTTGGCGGAGAAGTTGGTTCCATGATTGCTGAAGGCCCTTGGGTATTTGTTGGCATACCTAATTTCGTTAAGGCATGGAACATTCAGACCTCAGCTGATCTGACTCTTAGCGGACCCGTTGGCCTAGTTTATGCCCTTGTTGTGGGCAATGATTTACTCTTTGCTGGGTTTAAATTGACCATTGGGACTGCGTTTGTTGCCTCCCTTGTGGAACAGGATGGATCCATATTGGCATGGAGATTTAATGTGGCAACCAACTGCTTTGAGCCAGCTGCATCACTCAATGGCCACACCCTTCCTGTTGTTTCATTAGTTGTTGGAGCTAATAGGCTCTACTCTGGTTCCATGGACCATTCTATTAAAATATGGAGTCTGGAATCTTTACAATGTCTACAGACACTGACAGATCATACATCAGTTGTAATGTCTGTACTTTGCTGGGAGCAATTCCTTTTGTCGTGTTCACTTGATAAGACAATAAAGGTGTGGGCTGCTACAGAAAGTGGAAACTTGGAAGTAACTTACACGCAAAAAGAAGATCATGGCTTGCTTACTCTCTGTGGGATGCATGATCAAGATGGGAAGCCTATTTTGTTATGTTCGTGCAATGACAACTCTGTTCGCCTTTATGATTTGCCATCGTTCTCTGAGAGGGGTAAAATATACTCCAAGGAAGAAATTAGATCAATCCAAGCTGGTCCAGGCGGCATCTTCTTTACCGGTGATGGGACTGGACAAGTGAAAGATTCGTTTGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGTTCCTACTAGTGGAGGGGATGGCTTGGAGGATTTCTTTAAAAAGGTTCAAGAGATTGAAAAACAGAACGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAGCAGCGGATGGAAAAAGATGTCGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGATCAAAGTCGAAGAACTTGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCAGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGACATGGCAGTATTGGTGGATGCGCAAGGGGATATGCTCGACAATATTGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGAGAGAGTCGCCCTCTGCTATCCCTCTCCTTCCCCTGTTTCTCTCAGAAGCCCAAATCCCATCGGCCGCTGCAGTTCCTCTGGCTGAAAGGATACCGCTCTCTAATAGTAGATTGGGAAGATTCTATGGAGTTAGACGCTGTTTCTGTTTCTTTTTATGTTTCTATTACTCTGTCTGATTGGCGCTGCATGTTCTCTTTGGCAGTTTTGATTCAAATGACTGCATTGTCATTTCTGAGGCCAAGAACATCTGCTAAGTTCTCCTTGGTTTTGGGCATTTCCCCGCAAATTTACGAGAAATTAGGCTTATTCTGCCCCAAGATTACCAAATCCTTCCTGAATCCATGTGCCCACCAATCGCATATTCAAAGCTTTTGGAGGGTTTTTCCATTAGGCGTACTGTATTCGACTCAATCCTCAAAACTTCCTGAATATGAAATGCCTACCGTCACCTGGGGAGCTGTTCAAGGGCGCAAAGAAAAACTTGTGTCCCGAGTCATAATCTGTGACTATTTAAAGAGTTTGGGGATTATTCCTGATGAATTAGAACACTTGGAGCTGCCTTCTACAGTTGAAGTCATGAGAGAGCGTGTCGAGTTTCTTCAGAAGTTAGGATTGACTATCGATGACATTAACGAGTTCCCATTAATGCTAGGCTGTAGTGTTCGCAAAAATATAATACCTGTTCTAGGTTACTTGGAGAAAATTGGGATTCCAAGGCCAAAACTTGGAGAATTTATTAAGAATTATCCACAGGTCTTGCATGCCAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGCTTCTTCGTGGGCTCGATGTGGAGAAAGAAGATATTGGATATGTCCTACAGAAATACCCTGAGCTTCTGGGTTTCAAGCTTGAGGGGACAATGAGTACATCTGTTGCGTATCTTGTGAGTATAGGTGTTAATCCAAGGGATATTGGACCAATGGTCACACAATACCCGTACTTTTTGGGGATGAGAGTTGGAACCATGATCAAGCCCCTTGTTGAGTTTATTGTTTCTCTAGGTTTGCCAAAGAAGATAGTAGCAAGAATGCTCGAGAAGCGAGCATACATACTCGGTTACGATTTTGAAGAGACTGTGAAACCCAATATAGATTGCTTGCTAAGCTTTGGGATTAGGAAGGAGCTGCTTCCCTCAGTGATTGCACAGTATCCACAAATTCTTGGGTTGCCTTTGAAAGCTAAGTTGTCTTCTCAGCAATTCTTCTTTGACCTAAAGCTCAAGATTGATCCTGCAGGGTTCGCACAAGTGATAGAAAAAATGCCACAGATAGTCAGCCTTCACCAACACGTGATCATTAAACCGGCAGAGTTCTTTCTTGGACGCGGTATACCCTCCTCTGATGTAGCTAAGATGATCATTAAATGTCCCCAGCTAGTCGCTTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTCTTCAAGTCTGAGATGGGCAGGCCAATTAAAGAGCTGGTCGACTTCCCCGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTATCAAAGGCTGCAGAGTAAGGGAATCAGGTGTTCATTAAATTGGTTTCTCAACTGCAGTGATCAAAGATTTGAGGAGAGATTGAAGGGTGAATTCATTGAAACAGAGAGTTTGAGGCCATCATTTTGTATGGGAGGGAGATTAGAGCTACCAAGGAATGAGATTATTGTGTCAGATGATGAGCTTGAGGAGGATGAGTGTGATGAACAACTTCACAGACGCATTGTTTCTCTTTAG 4314 45.18 MLGKVFKAQFSWLKTGNYWAKSAGGCPKWLLTPTHPACPRLSPVPHTRTPCAAHTPHASATLCPRPTRQRPTPLPTPCQHPSPTCYPPRVPTAILGMDVDGGGKRVFQRLGAPSGDSRNQKVCYHWRAGKCNRYPCPFLHRELNAPPHAASNGAVNTASKRGHGFASDDSTVSVPRRSPNFSGGSTWGRVHGGGNRIIRKTEKLCNFWVQGNCGYGDKCRYLHSWSLGESFSHLTQLDGHQKASDICLKQTRIPIYAENCDCLVVTGIAFPSGSDKLYTGSKDETVRVWDCQSGQCMAVINLGGEVGSMIAEGPWVFVGIPNFVKAWNIQTSADLTLSGPVGLVYALVVGNDLLFAGFKLTIGTAFVASLVEQDGSILAWRFNVATNCFEPAASLNGHTLPVVSLVVGANRLYSGSMDHSIKIWSLESLQCLQTLTDHTSVVMSVLCWEQFLLSCSLDKTIKVWAATESGNLEVTYTQKEDHGLLTLCGMHDQDGKPILLCSCNDNSVRLYDLPSFSERGKIYSKEEIRSIQAGPGGIFFTGDGTGQVKDSFEIPRGQPSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKIKVEELDRENLANRQRPGCGKGSGVDRSRTATTLSLKKKLKDKMTEFQILREKIHQEYQEVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGESRPLLSLSFPCFSQKPKSHRPLQFLWLKGYRSLIVDWEDSMELDAVSVSFYVSITLSDWRCMFSLAVLIQMTALSFLRPRTSAKFSLVLGISPQIYEKLGLFCPKITKSFLNPCAHQSHIQSFWRVFPLGVLYSTQSSKLPEYEMPTVTWGAVQGRKEKLVSRVIICDYLKSLGIIPDELEHLELPSTVEVMRERVEFLQKLGLTIDDINEFPLMLGCSVRKNIIPVLGYLEKIGIPRPKLGEFIKNYPQVLHASVIVELAPVVKLLRGLDVEKEDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVEFIVSLGLPKKIVARMLEKRAYILGYDFEETVKPNIDCLLSFGIRKELLPSVIAQYPQILGLPLKAKLSSQQFFFDLKLKIDPAGFAQVIEKMPQIVSLHQHVIIKPAEFFLGRGIPSSDVAKMIIKCPQLVACRVELMKNSYYFFKSEMGRPIKELVDFPEYFTYSLESRIKPRYQRLQSKGIRCSLNWFLNCSDQRFEERLKGEFIETESLRPSFCMGGRLELPRNEIIVSDDELEEDECDEQLHRRIVSL 1437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27743657 27778485 - ClCG10G013530.2 Cla10g01288 282947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01288 1437 Gene3D - 114 227 - -
Cla10g01288 1437 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 749 811 IPR000727 -
Cla10g01288 1437 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872
Cla10g01288 1437 SUPERFAMILY WD40 repeat-like 265 549 IPR036322 GO:0005515
Cla10g01288 1437 SMART WD40_4 251 290 IPR001680 GO:0005515
Cla10g01288 1437 SMART WD40_4 428 465 IPR001680 GO:0005515
Cla10g01288 1437 SMART WD40_4 388 425 IPR001680 GO:0005515
Cla10g01288 1437 SMART WD40_4 471 512 IPR001680 GO:0005515
Cla10g01288 1437 SUPERFAMILY t-snare proteins 579 804 IPR010989 GO:0016020|GO:0016192
Cla10g01288 1437 ProSitePatterns Syntaxin / epimorphin family signature. 755 794 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cla10g01288 1437 ProSiteProfiles Zinc finger C3H1-type profile. 199 226 IPR000571 GO:0046872
Cla10g01288 1437 CDD SNARE_syntaxin1-like 748 810 - -
Cla10g01288 1437 SMART tSNARE_6 744 811 IPR000727 -
Cla10g01288 1437 Pfam SNARE domain 785 837 IPR000727 -
Cla10g01288 1437 CDD SynN 579 736 IPR006011 GO:0016020
Cla10g01288 1437 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Cla10g01288 1437 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Cla10g01288 1437 PRINTS G protein beta WD-40 repeat signature 452 466 IPR020472 -
Cla10g01288 1437 SMART c3hfinal6 201 225 IPR000571 GO:0046872
Cla10g01288 1437 SMART c3hfinal6 117 142 IPR000571 GO:0046872
Cla10g01288 1437 Pfam Syntaxin 581 784 IPR006011 GO:0016020
Cla10g01288 1437 MobiDBLite consensus disorder prediction 150 186 - -
Cla10g01288 1437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 428 - -
Cla10g01288 1437 SUPERFAMILY CCCH zinc finger 200 224 IPR036855 GO:0046872
Cla10g01288 1437 Pfam WD domain, G-beta repeat 430 464 IPR001680 GO:0005515
Cla10g01288 1437 Pfam WD domain, G-beta repeat 393 425 IPR001680 GO:0005515
Cla10g01288 1437 Pfam WD domain, G-beta repeat 261 290 IPR001680 GO:0005515
Cla10g01288 1437 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 299 IPR001680 GO:0005515
Cla10g01288 1437 Gene3D - 741 842 - -
Cla10g01288 1437 Gene3D - 364 564 IPR015943 GO:0005515
Cla10g01288 1437 Coils Coil 752 772 - -
Cla10g01288 1437 MobiDBLite consensus disorder prediction 150 185 - -
Cla10g01288 1437 Pfam CCCH-type zinc finger 203 223 IPR041367 -
Cla10g01288 1437 PANTHER EXPRESSED PROTEIN 974 1417 - -
Cla10g01288 1437 PANTHER CGI-12 PROTEIN-RELATED 974 1417 IPR003690 GO:0003690|GO:0006355
Cla10g01288 1437 Coils Coil 579 613 - -
Cla10g01288 1437 MobiDBLite consensus disorder prediction 62 82 - -
Cla10g01288 1437 MobiDBLite consensus disorder prediction 68 82 - -
Cla10g01288 1437 Pfam mTERF 1076 1384 IPR003690 GO:0003690|GO:0006355
Cla10g01288 1437 Gene3D Transcription termination factor 3, mitochondrial 1181 1393 IPR038538 -
Cla10g01288 1437 Gene3D Transcription termination factor 3, mitochondrial 1040 1180 IPR038538 -
Cla10g01288 1437 Gene3D - 228 357 IPR015943 GO:0005515
Cla10g01288 1437 SMART mt_12 1054 1085 IPR003690 GO:0003690|GO:0006355
Cla10g01288 1437 SMART mt_12 1271 1301 IPR003690 GO:0003690|GO:0006355
Cla10g01288 1437 SMART mt_12 1162 1193 IPR003690 GO:0003690|GO:0006355
Cla10g01288 1437 SMART mt_12 1126 1157 IPR003690 GO:0003690|GO:0006355
Cla10g01288 1437 SMART mt_12 1338 1369 IPR003690 GO:0003690|GO:0006355
Cla10g01288 1437 SMART mt_12 1198 1229 IPR003690 GO:0003690|GO:0006355
Cla10g01288 1437 SMART mt_12 1306 1337 IPR003690 GO:0003690|GO:0006355
Cla10g01288 1437 SMART mt_12 1090 1121 IPR003690 GO:0003690|GO:0006355
Cla10g01288 1437 SMART mt_12 1234 1266 IPR003690 GO:0003690|GO:0006355
Cla10g01288 1437 SMART SynN_4 574 700 IPR006011 GO:0016020
Cla10g01288 1437 Gene3D - 579 707 - -
Cla10g01288 1437 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 434 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00320 Cla-Chr2:3108165 Cla10g01288 Cla-Chr10:27743657 6.98E-09 dispersed
Cla02g00521 Cla-Chr2:5368052 Cla10g01288 Cla-Chr10:27743657 2.15E-35 dispersed
Cla02g00828 Cla-Chr2:11076563 Cla10g01288 Cla-Chr10:27743657 8.57E-50 dispersed
Cla02g00831 Cla-Chr2:11118631 Cla10g01288 Cla-Chr10:27743657 6.66E-87 dispersed
Cla03g00050 Cla-Chr3:539048 Cla10g01288 Cla-Chr10:27743657 9.92E-06 dispersed
Cla08g00123 Cla-Chr8:2455476 Cla10g01288 Cla-Chr10:27743657 4.61E-10 dispersed
Cla08g00127 Cla-Chr8:2505847 Cla10g01288 Cla-Chr10:27743657 3.39E-10 dispersed
Cla09g02145 Cla-Chr9:39069531 Cla10g01288 Cla-Chr10:27743657 1.33E-143 dispersed
Cla10g01288 Cla-Chr10:27743657 Cla10g01736 Cla-Chr10:33181092 3.62E-73 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61889 PF02536 mTERF 7.00E-104 No_clan Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01288 K15032 - csv:101203314 967.992