Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01302 ATGGATCAAAGCTCTGAGCTTTACAGATTGCTGGCACAGAACGGAGCCTTCAGCCTGGGCGGCGCCGGCGGATCCTGCGGCTTTCCGGCGACCCAAAGCATGTCGAGCTCTTCCTCTTATTACCCTTTGGATAAGTCCACGGCGGCGGCCACCAGTGAGGCAGCGGTGCCGTCGGCCCACGACAGAGCTCTGGCGGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGGAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCATCTCTTCTGGCAAAAGTGGTTGAGCGAGTGAAAGAGCTGAAGAACGAGACGTCGGAGATCGCGGAGCTCGAAAGCTTCCCTTCGGAGACGGACGAGATCAGTGTGCTGTCCGGAGAGCAGTCGGTGGACGGAAGGCTTGTGTTCAAGGCGTCGTTGTGTTGCGAGGACCGTTCCGACCTCATCCCGGACCTCAACGACATCCTTAATTCCCTCCAACTTAAAACCCTTAGGGCTGACATTGTCACGGTGGGTGGCCGGATCCGCAACGTCCTCCTTATCGCTGCCAACCACCACCACAGCCTCGAGTCCGTTCATTTCCTTCAAAATGCCTTGAAATCTCTCCTTGAACGCTCCAATTCTAGCCTTACATCCAAGAGGAGGCGCCTTGTACTTCACCACAAATGA 708 54.94 MDQSSELYRLLAQNGAFSLGGAGGSCGFPATQSMSSSSSYYPLDKSTAAATSEAAVPSAHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKNETSEIAELESFPSETDEISVLSGEQSVDGRLVFKASLCCEDRSDLIPDLNDILNSLQLKTLRADIVTVGGRIRNVLLIAANHHHSLESVHFLQNALKSLLERSNSSLTSKRRRLVLHHK 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27943059 27944807 - ClCG10G013680.1 Cla10g01302 282961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01302 235 SMART finulus 71 120 IPR011598 GO:0046983
Cla10g01302 235 CDD bHLH_AtAIG1_like 61 136 - -
Cla10g01302 235 Pfam Helix-loop-helix DNA-binding domain 69 114 IPR011598 GO:0046983
Cla10g01302 235 PANTHER TRANSCRIPTION FACTOR BHLH30 4 233 IPR045847 GO:0003700|GO:0006355
Cla10g01302 235 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 4 233 - -
Cla10g01302 235 Gene3D - 61 125 IPR036638 GO:0046983
Cla10g01302 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 124 IPR036638 GO:0046983
Cla10g01302 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01800 Cla-Chr1:32940051 Cla10g01302 Cla-Chr10:27943059 3.73E-20 dispersed
Cla02g01754 Cla-Chr2:32480318 Cla10g01302 Cla-Chr10:27943059 1.17E-36 dispersed
Cla06g00960 Cla-Chr6:18618655 Cla10g01302 Cla-Chr10:27943059 8.95E-52 dispersed
Cla10g01302 Cla-Chr10:27943059 Cla11g00581 Cla-Chr11:6578960 2.81E-31 dispersed
Cla10g01302 Cla-Chr10:27943059 Cla08g01166 Cla-Chr8:24533003 3.28E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61890 PF00010 HLH 3.60E-12 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01302 - K22484 csv:101220675 371.703