Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01313 ATGGCTTCTGGTAATGGGTTTTATCCCACTGATGAATTCAATTTGGATGCTAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCAAAGATTGGGGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAATACAAAAATCAGATTGTGGCTATCAAAATGGTGGGTAAAGGAGATACTCCTGAGAGGATGGCCAGAAGAGAAGCTCGGTTTGCTAGAGAGGTTGCAATGTTGTCCAAAGTGCAACACAAGAACTTAGTGAAGTTTATTGGCGCTTGCAAGGAACCTATGATGGTTATAGTAACTGAATTACTCACAGGTGGCACATTGCGCAAACATCTCTTGAATTTGAGGCCAAGGAGCTTGGAACTTGATGTGGCGATCGGATTTGCGCTTGATATTGCTCGTGCCATGGAGTGTTTACACTCCCATGGAATTATTCACCGTGACCTTAAACCAGAAAACTTGATATTGACTGCAGACCGTAAAACAGTTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACATATAGGTGGATGGCTCCAGAGCTCTATAGCACAGTCACTTTAAAACATGGTGATAAGAAGCATTATAATCATAAAGTTGATGCCTACAGCTTTGCCATTGTATTGTGGGAGCTCATCCTTAACAGGCTGCCTTTCGAAGGCATGTCGAATTTACAGGCGGCGTATGCAGCTGCTTTTAAGAACATGAGGCCCAGTGCTGAAAACCTTCCAGAGGACTTAGCTTTAATAGTGACATCATGTTGGAGAGAAGATCCAAATACAAGGCCAAACTTCAGCCAGATTATACAGATGCTATTGCAATCCCTCTCTAGAATATCACCACGAGCACCCATGATCCCACCTCGGATATGTGCTTCTGAAAACGTCGTGATGCCACCCGAATCTCCCGGCACAAATTCCTTGATGGTTGTCAGACATGGCTCGGGGGAAGCCACACACGGCATGATCGAAGAAACCCCAAAAAGCTCCTTCTTCTGCTTTAACAAGTGTTACTGA 1059 44.1 MASGNGFYPTDEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERMARREARFAREVAMLSKVQHKNLVKFIGACKEPMMVIVTELLTGGTLRKHLLNLRPRSLELDVAIGFALDIARAMECLHSHGIIHRDLKPENLILTADRKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSRISPRAPMIPPRICASENVVMPPESPGTNSLMVVRHGSGEATHGMIEETPKSSFFCFNKCY 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28072770 28079569 - ClCG10G013790.1 Cla10g01313 282972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01313 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Cla10g01313 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Cla10g01313 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Cla10g01313 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Cla10g01313 352 SUPERFAMILY Protein kinase-like (PK-like) 18 310 IPR011009 -
Cla10g01313 352 PANTHER PROTEIN KINASE ATN1 1 329 - -
Cla10g01313 352 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01313 352 Gene3D Transferase(Phosphotransferase) domain 1 108 298 - -
Cla10g01313 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 57 IPR017441 GO:0005524
Cla10g01313 352 CDD STKc_MAP3K-like 32 286 - -
Cla10g01313 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01313 352 PANTHER SERINE-THREONINE PROTEIN KINASE 1 329 - -
Cla10g01313 352 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Cla10g01313 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Cla10g01313 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01313 Cla-Chr10:28072770 Cla10g02141 Cla-Chr10:37063622 3.18E-08 dispersed
Cla10g01313 Cla-Chr10:28072770 Cla06g01701 Cla-Chr6:30598998 0 wgd
Cla10g01313 Cla-Chr10:28072770 Cla09g01885 Cla-Chr9:36549776 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80866 PF07714 PK_Tyr_Ser-Thr 1.20E-56 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01313 - - csv:101219563 676.396