Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01325 ATGAGAATCCACGCCCCGTCACCGTTAAGAAACGAAGATCATACTTACGACGACGTTTTGCGTGGGACATGCTCGAATCTTAGCGACCAAATTTATCGGAGAAAAGCGATTTTTGGGATTTTGGGAATTTTGAAGAGAAATTGCTCGAAAATGGCGGGTCTTGAGGAACTTAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTACGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGATGATTCAGGGAGTAGTGAGAGAACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTCGAAAAGGAGAAAAGACAGCAGCTTCTTACTGAGATAAGGACACTATGCGAAGCACCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAGTACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTCTGAAAAGATGTATACCCGAGCCTGTCCTTTCATCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTGAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCACCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCGCCGGAGTTTTGCTCTTTTGTCGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAACTGCTTTCACACCCATTTATTAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAGTACAGAGGATGAAGGACTTGGCTGATATGTTGACAATCCATTATTACTTGCTTTTTGATGGATCTGATGAATTCTGGCACCATACAAAAGCTCTGTACCATGAAAGCTCAAGTTTAAGTTTTTCAGGGAAGCAATTTTCTGGTCCAAGTGATATCTTTGCCAAACTATCAGAAGTTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTTGTTGAAAAACTCCAATGTCGTGCTCACGGTCGGGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAGAGTAAGAAAATGGGATCCTTTCGGGAGCAGTTCATCATCGAACCAAGCAACCTCATCGGTCGTTATTTCATTGCCAAACAAGAGCTTTATATAATTCAATAG 1707 42.82 MRIHAPSPLRNEDHTYDDVLRGTCSNLSDQIYRRKAIFGILGILKRNCSKMAGLEELKKKLTPLFDAEKGLSTDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKRCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPVQRMKDLADMLTIHYYLLFDGSDEFWHHTKALYHESSSLSFSGKQFSGPSDIFAKLSEVRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28198744 28205422 - ClCG10G013920.1 Cla10g01325 282984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01325 568 Pfam Protein kinase domain 137 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01325 568 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 52 567 - -
Cla10g01325 568 SUPERFAMILY Protein kinase-like (PK-like) 135 425 IPR011009 -
Cla10g01325 568 PANTHER - 52 567 - -
Cla10g01325 568 Gene3D Transferase(Phosphotransferase) domain 1 215 415 - -
Cla10g01325 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Cla10g01325 568 CDD PKc_MAPKK_plant_like 134 393 - -
Cla10g01325 568 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Cla10g01325 568 SUPERFAMILY NTF2-like 414 566 IPR032710 -
Cla10g01325 568 ProSiteProfiles Protein kinase domain profile. 133 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01325 568 Gene3D - 416 566 - -
Cla10g01325 568 ProSiteProfiles Nuclear transport factor 2 domain profile. 416 566 IPR018222 -
Cla10g01325 568 SMART serkin_6 133 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01325 568 Gene3D Phosphorylase Kinase; domain 1 109 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01325 Cla-Chr10:28198744 Cla11g00183 Cla-Chr11:2179226 8.52E-65 dispersed
Cla10g01325 Cla-Chr10:28198744 Cla03g01476 Cla-Chr3:30269699 7.26E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80868 PF00069 Pkinase 2.60E-59 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01325 K20607 - csv:101217978 1003.05