Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g01325 | ATGAGAATCCACGCCCCGTCACCGTTAAGAAACGAAGATCATACTTACGACGACGTTTTGCGTGGGACATGCTCGAATCTTAGCGACCAAATTTATCGGAGAAAAGCGATTTTTGGGATTTTGGGAATTTTGAAGAGAAATTGCTCGAAAATGGCGGGTCTTGAGGAACTTAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTACGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGATGATTCAGGGAGTAGTGAGAGAACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTCGAAAAGGAGAAAAGACAGCAGCTTCTTACTGAGATAAGGACACTATGCGAAGCACCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAGTACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTCTGAAAAGATGTATACCCGAGCCTGTCCTTTCATCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTGAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCACCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCGCCGGAGTTTTGCTCTTTTGTCGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAACTGCTTTCACACCCATTTATTAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAGTACAGAGGATGAAGGACTTGGCTGATATGTTGACAATCCATTATTACTTGCTTTTTGATGGATCTGATGAATTCTGGCACCATACAAAAGCTCTGTACCATGAAAGCTCAAGTTTAAGTTTTTCAGGGAAGCAATTTTCTGGTCCAAGTGATATCTTTGCCAAACTATCAGAAGTTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTTGTTGAAAAACTCCAATGTCGTGCTCACGGTCGGGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAGAGTAAGAAAATGGGATCCTTTCGGGAGCAGTTCATCATCGAACCAAGCAACCTCATCGGTCGTTATTTCATTGCCAAACAAGAGCTTTATATAATTCAATAG | 1707 | 42.82 | MRIHAPSPLRNEDHTYDDVLRGTCSNLSDQIYRRKAIFGILGILKRNCSKMAGLEELKKKLTPLFDAEKGLSTDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKRCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPVQRMKDLADMLTIHYYLLFDGSDEFWHHTKALYHESSSLSFSGKQFSGPSDIFAKLSEVRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ | 568 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 28198744 | 28205422 | - | ClCG10G013920.1 | Cla10g01325 | 282984 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g01325 | 568 | Pfam | Protein kinase domain | 137 | 389 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla10g01325 | 568 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 52 | 567 | - | - | |
Cla10g01325 | 568 | SUPERFAMILY | Protein kinase-like (PK-like) | 135 | 425 | IPR011009 | - | |
Cla10g01325 | 568 | PANTHER | - | 52 | 567 | - | - | |
Cla10g01325 | 568 | Gene3D | Transferase(Phosphotransferase) domain 1 | 215 | 415 | - | - | |
Cla10g01325 | 568 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 253 | 265 | IPR008271 | GO:0004672|GO:0006468 | |
Cla10g01325 | 568 | CDD | PKc_MAPKK_plant_like | 134 | 393 | - | - | |
Cla10g01325 | 568 | ProSitePatterns | Protein kinases ATP-binding region signature. | 139 | 162 | IPR017441 | GO:0005524 | |
Cla10g01325 | 568 | SUPERFAMILY | NTF2-like | 414 | 566 | IPR032710 | - | |
Cla10g01325 | 568 | ProSiteProfiles | Protein kinase domain profile. | 133 | 389 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla10g01325 | 568 | Gene3D | - | 416 | 566 | - | - | |
Cla10g01325 | 568 | ProSiteProfiles | Nuclear transport factor 2 domain profile. | 416 | 566 | IPR018222 | - | |
Cla10g01325 | 568 | SMART | serkin_6 | 133 | 389 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla10g01325 | 568 | Gene3D | Phosphorylase Kinase; domain 1 | 109 | 214 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla10g01325 | Cla-Chr10:28198744 | Cla11g00183 | Cla-Chr11:2179226 | 8.52E-65 | dispersed | |
Cla10g01325 | Cla-Chr10:28198744 | Cla03g01476 | Cla-Chr3:30269699 | 7.26E-73 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80868 | PF00069 | Pkinase | 2.60E-59 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g01325 | K20607 | - | csv:101217978 | 1003.05 |