Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g01326 | ATGTTGAAACAACAGCTTACAGAAAGGAGAAAAAATTATTGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTCGCACCATATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCCAATGTCCACAAGATCTTCGGCGCCAGCAATGTTAGTAAACTGCTGAATGAAGTCCAGCCGCATCAGCGGGAGGACGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCAAGGATGAAAGACCCTGTCTATGGCTGCGTTGGTGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTTGACGCTACCAACGCCGACCTCATTCGCTATGCCTGCAGCGAAATCCCCACTCCATCTCCGTCCTCGTCATCGCAATACGCTCGAAGGTCGTCGTCGACGAGCCACGAAGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATTGA | 561 | 50.27 | MLKQQLTERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGH | 186 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 28218498 | 28221567 | + | ClCG10G013930.2 | Cla10g01326 | 282985 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g01326 | 186 | Pfam | Lateral organ boundaries (LOB) domain | 25 | 121 | IPR004883 | - | |
| Cla10g01326 | 186 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 16 | 178 | - | - | |
| Cla10g01326 | 186 | MobiDBLite | consensus disorder prediction | 134 | 160 | - | - | |
| Cla10g01326 | 186 | ProSiteProfiles | LOB domain profile. | 24 | 125 | IPR004883 | - | |
| Cla10g01326 | 186 | Coils | Coil | 104 | 124 | - | - | |
| Cla10g01326 | 186 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 25 | 16 | 178 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla09g01879 | Cla10g01326 | CCT | |
| Cla09g01879 | Cla10g01326 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla07g00463 | Cla-Chr7:6349989 | Cla10g01326 | Cla-Chr10:28218498 | 5.76E-47 | dispersed | |
| Cla09g02200 | Cla-Chr9:39611639 | Cla10g01326 | Cla-Chr10:28218498 | 4.78E-49 | dispersed | |
| Cla10g01326 | Cla-Chr10:28218498 | Cla02g01814 | Cla-Chr2:33227293 | 2.36E-47 | dispersed | |
| Cla01g02437 | Cla-Chr1:38009851 | Cla10g01326 | Cla-Chr10:28218498 | 5.46E-40 | transposed | |
| Cla11g00579 | Cla-Chr11:6550126 | Cla10g01326 | Cla-Chr10:28218498 | 2.22E-50 | transposed | |
| Cla11g01084 | Cla-Chr11:21962719 | Cla10g01326 | Cla-Chr10:28218498 | 1.02E-60 | transposed | |
| Cla01g01323 | Cla-Chr1:26581837 | Cla10g01326 | Cla-Chr10:28218498 | 7.96E-63 | wgd | |
| Cla10g01326 | Cla-Chr10:28218498 | Cla06g01688 | Cla-Chr6:30476051 | 3.48E-77 | wgd | |
| Cla10g01326 | Cla-Chr10:28218498 | Cla09g01879 | Cla-Chr9:36482539 | 7.92E-74 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61891 | PF03195 | LOB | 2.80E-42 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g01326 | - | - | csv:101219482 | 339.732 |