Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01343 ATGGCAATAACAGCCCCAGGACAGCTCAATGTTAACGAGTCCCCTTCGTGGGGATCTAGAAGTGTTGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCGCTGAAGAAAATACGAATGGATAATGAGAGGGAAGGGTTCCCCATCACTGCCATACGAGAAATAAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATAAAGTTGAAAGAGATTGTGACATCTCCAGATGGTAACAAGTATAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATTAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTGCACAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGATGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATCACCTTATGGTACAGACCGCCTGAATTGCTGCTTGGGTCAACAAAATACGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGGTAGGGGCTTTCCTATTTAATAATCAACTCTATTATATGTACATCAGGTTCACAGTCATATTGTACTACAGCCTCTTGCGAAACAGTAAACCAATCATAACAAAAACCACACCGACGGATATCATGATATCAATTGGGAGAAACATCTTTAATGGTGATGAGAAAGTGTTGAGTTGTAGAGAGAAGTCCCATGATCAAAACGTGAAAGATGAACATGAAACCACATCAAGCCAACAAAGATCCCTCTCGGGGGATGGCCATGATACAAAACCTGTTGTCTCTAAACCATGGAGCCAAAGCAATCAAATGAGGCCCCGGATTGAAAGGCTCGTCAGTCTGTGGAAGAATGAAAACATACCATCGAGTTTCAAGAGGTCCATACCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCGGATGAAGTCAACTGGCCTGGGGTATCAAAAATCCCTTGGTACAACAATTTCAAACCCACAAGGCCAATGAAGAGACGTCTTAGAGAAGTATTCAGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGAGGATAGCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAAAGAAATCTTCTATCCATATCCAGTTTACCCAAGTATGAAGCATCACACGAGTTTCAGACAAAGAAGAAGCGTCAACAGCAACGACAACATGAAGAAACTGCAAAAAGACAGAAGTTGCAACATGCACAGCATGGGCGTCTTCCACCTATTCAGCAATCGGGGCAAGCTCATGCGCAGATGCGACCATTAGCTAACCAGCCTATTCATGGGTCTCAACCACCAATTGCTGCAGGGCCTAGCCATCATTTTGGGGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAACCCTCCTTCTGGATACAACCACCCAAGTCGTGGTGGTCAAGGTGGGGGTGGTTACGGCAACACACAGTATACTCAAGGACGAGGTGCACCCTATGGGTCTGGCAACATGTCTGGTGCTGGTCCCCGAGGTGGGGCTGGAGGTGCTGGTTATGGTGTGGGAGCTTCAAGTTACCCACAGAATGGTCCATATGCTGGTAGTTCTGGTACTGGCCGTGGCTCCAATGTGATGGGCGGAAACCGAAACCAACAATATGGATGGCAACAGTGA 1923 45.14 MAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNDGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEVGAFLFNNQLYYMYIRFTVILYYSLLRNSKPIITKTTPTDIMISIGRNIFNGDEKVLSCREKSHDQNVKDEHETTSSQQRSLSGDGHDTKPVVSKPWSQSNQMRPRIERLVSLWKNENIPSSFKRSIPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRIAAKDALDAEYFWTDPLPCDPKRNLLSISSLPKYEASHEFQTKKKRQQQRQHEETAKRQKLQHAQHGRLPPIQQSGQAHAQMRPLANQPIHGSQPPIAAGPSHHFGGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNTQYTQGRGAPYGSGNMSGAGPRGGAGGAGYGVGASSYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28417520 28425354 - ClCG10G014100.2 Cla10g01343 283002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01343 640 CDD STKc_CDK9_like 25 441 - -
Cla10g01343 640 SUPERFAMILY Protein kinase-like (PK-like) 19 251 IPR011009 -
Cla10g01343 640 MobiDBLite consensus disorder prediction 516 640 - -
Cla10g01343 640 MobiDBLite consensus disorder prediction 466 496 - -
Cla10g01343 640 Gene3D Transferase(Phosphotransferase) domain 1 112 350 - -
Cla10g01343 640 Gene3D Phosphorylase Kinase; domain 1 12 111 - -
Cla10g01343 640 PANTHER CELL DIVISION PROTEIN KINASE 361 576 - -
Cla10g01343 640 PANTHER CELL DIVISION PROTEIN KINASE 5 236 - -
Cla10g01343 640 MobiDBLite consensus disorder prediction 567 583 - -
Cla10g01343 640 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cla10g01343 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Cla10g01343 640 Gene3D Transferase(Phosphotransferase) domain 1 351 488 - -
Cla10g01343 640 PANTHER CYCLIN-DEPENDENT KINASE C-2 361 576 - -
Cla10g01343 640 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 236 - -
Cla10g01343 640 SMART serkin_6 25 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01343 640 MobiDBLite consensus disorder prediction 466 490 - -
Cla10g01343 640 SUPERFAMILY Protein kinase-like (PK-like) 358 449 IPR011009 -
Cla10g01343 640 ProSiteProfiles Protein kinase domain profile. 25 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g01343 640 MobiDBLite consensus disorder prediction 296 335 - -
Cla10g01343 640 MobiDBLite consensus disorder prediction 611 640 - -
Cla10g01343 640 MobiDBLite consensus disorder prediction 296 311 - -
Cla10g01343 640 Pfam Protein kinase domain 25 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02341 Cla-Chr2:38493991 Cla10g01343 Cla-Chr10:28417520 2.53E-139 dispersed
Cla10g01343 Cla-Chr10:28417520 Cla05g00613 Cla-Chr5:5686445 6.50E-19 dispersed
Cla10g01343 Cla-Chr10:28417520 Cla03g01582 Cla-Chr3:31590266 2.69E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80871 PF00069 Pkinase 8.70E-67 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01343 K08819 - csv:101215918 477.633