Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g01343 | ATGGCAATAACAGCCCCAGGACAGCTCAATGTTAACGAGTCCCCTTCGTGGGGATCTAGAAGTGTTGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCGCTGAAGAAAATACGAATGGATAATGAGAGGGAAGGGTTCCCCATCACTGCCATACGAGAAATAAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATAAAGTTGAAAGAGATTGTGACATCTCCAGATGGTAACAAGTATAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATTAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTGCACAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGATGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATCACCTTATGGTACAGACCGCCTGAATTGCTGCTTGGGTCAACAAAATACGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGGTAGGGGCTTTCCTATTTAATAATCAACTCTATTATATGTACATCAGGTTCACAGTCATATTGTACTACAGCCTCTTGCGAAACAGTAAACCAATCATAACAAAAACCACACCGACGGATATCATGATATCAATTGGGAGAAACATCTTTAATGGTGATGAGAAAGTGTTGAGTTGTAGAGAGAAGTCCCATGATCAAAACGTGAAAGATGAACATGAAACCACATCAAGCCAACAAAGATCCCTCTCGGGGGATGGCCATGATACAAAACCTGTTGTCTCTAAACCATGGAGCCAAAGCAATCAAATGAGGCCCCGGATTGAAAGGCTCGTCAGTCTGTGGAAGAATGAAAACATACCATCGAGTTTCAAGAGGTCCATACCGGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCGGATGAAGTCAACTGGCCTGGGGTATCAAAAATCCCTTGGTACAACAATTTCAAACCCACAAGGCCAATGAAGAGACGTCTTAGAGAAGTATTCAGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGAGGATAGCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAAAGAAATCTTCTATCCATATCCAGTTTACCCAAGTATGAAGCATCACACGAGTTTCAGACAAAGAAGAAGCGTCAACAGCAACGACAACATGAAGAAACTGCAAAAAGACAGAAGTTGCAACATGCACAGCATGGGCGTCTTCCACCTATTCAGCAATCGGGGCAAGCTCATGCGCAGATGCGACCATTAGCTAACCAGCCTATTCATGGGTCTCAACCACCAATTGCTGCAGGGCCTAGCCATCATTTTGGGGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAACCCTCCTTCTGGATACAACCACCCAAGTCGTGGTGGTCAAGGTGGGGGTGGTTACGGCAACACACAGTATACTCAAGGACGAGGTGCACCCTATGGGTCTGGCAACATGTCTGGTGCTGGTCCCCGAGGTGGGGCTGGAGGTGCTGGTTATGGTGTGGGAGCTTCAAGTTACCCACAGAATGGTCCATATGCTGGTAGTTCTGGTACTGGCCGTGGCTCCAATGTGATGGGCGGAAACCGAAACCAACAATATGGATGGCAACAGTGA | 1923 | 45.14 | MAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNDGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEVGAFLFNNQLYYMYIRFTVILYYSLLRNSKPIITKTTPTDIMISIGRNIFNGDEKVLSCREKSHDQNVKDEHETTSSQQRSLSGDGHDTKPVVSKPWSQSNQMRPRIERLVSLWKNENIPSSFKRSIPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRIAAKDALDAEYFWTDPLPCDPKRNLLSISSLPKYEASHEFQTKKKRQQQRQHEETAKRQKLQHAQHGRLPPIQQSGQAHAQMRPLANQPIHGSQPPIAAGPSHHFGGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNTQYTQGRGAPYGSGNMSGAGPRGGAGGAGYGVGASSYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ | 640 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 28417520 | 28425354 | - | ClCG10G014100.2 | Cla10g01343 | 283002 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g01343 | 640 | CDD | STKc_CDK9_like | 25 | 441 | - | - | |
Cla10g01343 | 640 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 251 | IPR011009 | - | |
Cla10g01343 | 640 | MobiDBLite | consensus disorder prediction | 516 | 640 | - | - | |
Cla10g01343 | 640 | MobiDBLite | consensus disorder prediction | 466 | 496 | - | - | |
Cla10g01343 | 640 | Gene3D | Transferase(Phosphotransferase) domain 1 | 112 | 350 | - | - | |
Cla10g01343 | 640 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 111 | - | - | |
Cla10g01343 | 640 | PANTHER | CELL DIVISION PROTEIN KINASE | 361 | 576 | - | - | |
Cla10g01343 | 640 | PANTHER | CELL DIVISION PROTEIN KINASE | 5 | 236 | - | - | |
Cla10g01343 | 640 | MobiDBLite | consensus disorder prediction | 567 | 583 | - | - | |
Cla10g01343 | 640 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 54 | IPR017441 | GO:0005524 | |
Cla10g01343 | 640 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 149 | 161 | IPR008271 | GO:0004672|GO:0006468 | |
Cla10g01343 | 640 | Gene3D | Transferase(Phosphotransferase) domain 1 | 351 | 488 | - | - | |
Cla10g01343 | 640 | PANTHER | CYCLIN-DEPENDENT KINASE C-2 | 361 | 576 | - | - | |
Cla10g01343 | 640 | PANTHER | CYCLIN-DEPENDENT KINASE C-2 | 5 | 236 | - | - | |
Cla10g01343 | 640 | SMART | serkin_6 | 25 | 441 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla10g01343 | 640 | MobiDBLite | consensus disorder prediction | 466 | 490 | - | - | |
Cla10g01343 | 640 | SUPERFAMILY | Protein kinase-like (PK-like) | 358 | 449 | IPR011009 | - | |
Cla10g01343 | 640 | ProSiteProfiles | Protein kinase domain profile. | 25 | 441 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla10g01343 | 640 | MobiDBLite | consensus disorder prediction | 296 | 335 | - | - | |
Cla10g01343 | 640 | MobiDBLite | consensus disorder prediction | 611 | 640 | - | - | |
Cla10g01343 | 640 | MobiDBLite | consensus disorder prediction | 296 | 311 | - | - | |
Cla10g01343 | 640 | Pfam | Protein kinase domain | 25 | 235 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g02341 | Cla-Chr2:38493991 | Cla10g01343 | Cla-Chr10:28417520 | 2.53E-139 | dispersed | |
Cla10g01343 | Cla-Chr10:28417520 | Cla05g00613 | Cla-Chr5:5686445 | 6.50E-19 | dispersed | |
Cla10g01343 | Cla-Chr10:28417520 | Cla03g01582 | Cla-Chr3:31590266 | 2.69E-13 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80871 | PF00069 | Pkinase | 8.70E-67 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g01343 | K08819 | - | csv:101215918 | 477.633 |