Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01351 ATGGCGGTTCTGCAGCTTCCTTGTGTGAGGATTACTGACTGTTCATCCTCGCCATTGTCGAGAGGAAGTAAATCGTCGTTGTTCTGGGGAAGCAATCTGTGCTTTGGAAATGGAAGTGTTAGGCATGGTCCGACAGTGAAAGCTTCATTCAATGGTCGAGTTGTTAAGGTTTTCGCCATGTCCGATAGTTCTTCTTCTTCTTCATCGTTTAAGATGAATCTCAATGAGTACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGAAGAATCTTCGTTCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTGAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCACTGAGATTAAAGACTTTGGTGATACACAGATGATGCTGAAGGAGAAAGCAGGATCTTTTAGCCTGGTTCTTGAAAGACCCTTTTCACCTTTTCCTATTCAACAGCTTCTGCTTTCAAACGATTTAGATACTTTATTTAACAGAGGTCGGGTGCCTATTGCTACTTGGAAGAAGGAAGTTTTGGCATCAAACTTACAAACATCTGATGCAAGCAGTGGGAACTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTCTACATCACAAGGTTGGAAACTTCTTAACGATCAAAATGGAAATGTAAAATCACATATGCAGAAAAACATTCTCACGCCTCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTTGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGTTATATTACGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATATACGTGGGGTCATGTATACAGACTGAAGCAGACGTAGAAGCTTTAGCAAATGACGTGGGAGTTACCGCTGTACTGAATTTTCAAGGTGCAACTGAGGCAGAAAACTGGGGGATTAATTCCAAGATAATCAACGAGTCGTGCCAAAAATTTAACATTCTAATGATCAGCTATCCTATCAGGGCAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTCCGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACTTCTGGTTTTGATCGATCTCCAGCAAGTGTTATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCAGCAAACCTGACAGGCATGATGGACCTCCCACTCATGCCGTTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGGCCTAGATATGAAGCAGAAATGAAACTTCCTCAGGGGAAGTATTATTATAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGATAGGGGGAATGTTAACAATGTAATAGTCATCGGCGACACTGCCAGTGTTAGGCCTTCAGTTCAACCGCAAAAAAAAGTAATCGAAAGGCCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCGGCTCGTTGCGTTGCATTTTCAACATTGGCGAATATCTCCGCCATGGGCCACGGTGGCTTCACCTTCATTTCGTCGCTATCTGGCCGGAGAACGCCATCCTCCGCCGAAATTCTCTGTCTATGTGAAAATATCCTCATCGCCGGTGCCGGAATCGCCGAATCTCAGAGGGGATTTGGAGTTTTTCCGATAGGTTGCCGCCAGGCCCAATTTATGTGGAGTTAA 1875 44.0 MAVLQLPCVRITDCSSSPLSRGSKSSLFWGSNLCFGNGSVRHGPTVKASFNGRVVKVFAMSDSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVKLTEIKDFGDTQMMLKEKAGSFSLVLERPFSPFPIQQLLLSNDLDTLFNRGRVPIATWKKEVLASNLQTSDASSGNSGFATFSSKFSTSQGWKLLNDQNGNVKSHMQKNILTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALANDVGVTAVLNFQGATEAENWGINSKIINESCQKFNILMISYPIRAGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSSKPDRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEAEMKLPQGKYYYKYITNGQWRHSTSSPAERDDRGNVNNVIVIGDTASVRPSVQPQKKVIERPLTENERFMLAKAARCVAFSTLANISAMGHGGFTFISSLSGRRTPSSAEILCLCENILIAGAGIAESQRGFGVFPIGCRQAQFMWS 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28549904 28560681 + ClCG10G014190.2 Cla10g01351 283010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01351 624 SUPERFAMILY E set domains 437 520 IPR014756 -
Cla10g01351 624 Gene3D Immunoglobulins 435 523 IPR013783 -
Cla10g01351 624 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 28 559 - -
Cla10g01351 624 Pfam Glycogen recognition site of AMP-activated protein kinase 440 521 IPR032640 -
Cla10g01351 624 CDD E_set_AMPKbeta_like_N 440 519 - -
Cla10g01351 624 SUPERFAMILY PDZ domain-like 61 163 IPR036034 GO:0005515
Cla10g01351 624 CDD DSP_laforin-like 290 431 IPR045204 GO:0019203|GO:0046838
Cla10g01351 624 ProSiteProfiles PDZ domain profile. 78 159 IPR001478 GO:0005515
Cla10g01351 624 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 283 425 IPR029021 -
Cla10g01351 624 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 28 559 IPR030066 GO:0005983
Cla10g01351 624 Gene3D Protein tyrosine phosphatase superfamily 284 549 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00459 Cla-Chr7:6259500 Cla10g01351 Cla-Chr10:28549904 6.75E-22 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01351 - - csv:101214241 1014.99