Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01367 ATGGATAGAATCATCCAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCGGCCACCGGAGCGGCGGCGGCCACGGACGAACACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGATCCTGATAGCGACATCGTAGCGCAATGGAACCGGGTGTTTCTAGTGACATGCCTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTGGGAGGACCGGCGTGCCTGACCTCAGAGGTGAATCTGGGAGTGGTGATCACATTCTTCAGAACGGTGACGGATCTGTTCTTCTTGCTGCACATGGTGCTGAAGTTTCGAACCGCGTATGTGGCTCCAAGCTCTAGGGTTTTTGGAAGGGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAATCTGATTTTGTGATTGATCTTGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGAAACTCAAGGGTAGATCATGCCAACAACACAATTGCTCTCCTTGTTTTGCTACAATACGTTCCAAGGCTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACCACTGGTGTTGTTGCCAAAACTGCTTGGGCCGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCTAGTCATGTTTTGGGATCTACATGGTATTTGCTGTCCATAGGGAGACAGTTCTCATGTTGGAAATCAGAGTGTGCAAAGGAAAATGCCTCCAAAGTTCTAACATGCCTACCCTTCTTCTTGGATTGTAACAGTTTGAAAGACACTGAAAGACAATATTGGCTCAATGTCACTCAGGTTACTTCCAAATGTGATCCTAGGAATGAGAACATAAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCCCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCATACGGTCAAACTTTGGATACAACAACTTATATTGGCGAGACATTATTTTGCATATCAACTTGCATATTTGGGTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCAATGACAGTAAGACTTGAAGAATGGAGGATAAAGAGAAGGGACACTGAAGAATGGATGAGACGTCGTCAATTACCACCAGATTTGCAGGAACGAGTTCGCCGATTCGTCCAATATAAATGGCTGGCCACGAGAGGAGTTAATGAAGAATCTATATTGCGTTCGTTGCCTATAGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTGTCACTCGTTCGTCGTGTTCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCCATATGTGAGCGTTTAGTCTCATCCTTGTGTACTCAAGGAACATATATTGTGCGAGAGGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCAACGACGAATGGCGGTCGATCTGGCTTTTTCAACTCCATTACACTAAAACCAGGAGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGCTCTAGTTTGAATATGCCTTCTTCTACTCGAAGCGTCCGTGCACTTACCGAAGTTGAAGCTTTTGCTCTTCGAGCTGAGGATCTCAAGTTCGTTGCTGGACAATTTAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGATCAGCAGCATTCAGAGACAGTTTAAGTTACTATGCAGATTCAGTGCAACAAGATATCGAATACGATATCGAGCTAGCAGATGAAAATTATGACGACGACAGCAACGACGACGAGGACGACGACGACATGTCTTCTGCAGACTACATGAACAAAACTCAACATCTAGGGGCCACAATTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAGTTAATCAAAAGGCTCAAACATCCAAACCTTCAAGTTTGAAAATGCCGAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2148 44.46 MDRIIQSPASKFRPFRRQLIGSSSDSATGAAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVNLGVVITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFVIDLAATLPLPQIVMWLVIPATRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASKVLTCLPFFLDCNSLKDTERQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRSVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKRSAAFRDSLSYYADSVQQDIEYDIELADENYDDDSNDDEDDDDMSSADYMNKTQHLGATILASKFAANTRRGVNQKAQTSKPSSLKMPKLFKPDEPDFSMDG 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28734213 28737875 - ClCG10G014350.1 Cla10g01367 283026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01367 715 Pfam Cyclic nucleotide-binding domain 479 566 IPR000595 -
Cla10g01367 715 ProSiteProfiles cAMP/cGMP binding motif profile. 456 586 IPR000595 -
Cla10g01367 715 CDD CAP_ED 456 587 IPR000595 -
Cla10g01367 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 37 713 - -
Cla10g01367 715 SMART cnmp_10 456 587 IPR000595 -
Cla10g01367 715 Pfam Ion transport protein 58 383 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla10g01367 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 713 - -
Cla10g01367 715 MobiDBLite consensus disorder prediction 701 715 - -
Cla10g01367 715 SUPERFAMILY Voltage-gated potassium channels 49 378 - -
Cla10g01367 715 Gene3D Jelly Rolls 454 574 IPR014710 -
Cla10g01367 715 Gene3D - 61 381 - -
Cla10g01367 715 MobiDBLite consensus disorder prediction 683 698 - -
Cla10g01367 715 MobiDBLite consensus disorder prediction 683 715 - -
Cla10g01367 715 Gene3D Helix hairpin bin 383 447 - -
Cla10g01367 715 SUPERFAMILY cAMP-binding domain-like 386 581 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01367 Cla-Chr10:28734213 Cla10g01398 Cla-Chr10:29072186 0 dispersed
Cla02g02070 Cla-Chr2:35777075 Cla10g01367 Cla-Chr10:28734213 0 transposed
Cla04g00887 Cla-Chr4:23866399 Cla10g01367 Cla-Chr10:28734213 0 transposed
Cla04g01234 Cla-Chr4:27437952 Cla10g01367 Cla-Chr10:28734213 2.42E-111 transposed
Cla05g02646 Cla-Chr5:37669363 Cla10g01367 Cla-Chr10:28734213 0 transposed
Cla06g01285 Cla-Chr6:26208231 Cla10g01367 Cla-Chr10:28734213 0 transposed
Cla10g00605 Cla-Chr10:9002173 Cla10g01367 Cla-Chr10:28734213 8.24E-121 transposed
Cla10g01367 Cla-Chr10:28734213 Cla06g01653 Cla-Chr6:30046179 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01367 K05391 - csv:101216651 1339.32