Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01416 ATGATGAAGGTTGTGTTGGTGTTGGTTTCAATGGCTGTTCTTATGCCAACTATAAGAGCTAGCATTGCTGAATATGATGATTTTTTACTCCAAAAGGCTGAAGAAGCCAAACAAGCTTCTCTTGAAGCCTTCCATCCTGATCCCATGAATGTCACTGACCATTTCAACCAACAAGTTCATTTAGCTTTGGAGGGAATAGAAGGAAGCAATAGTACTAGGAGGAGTCTGGCGAAATATAACGGGCCGTGTTTGGCGACGAACCCGATTGACCGTTGTTGGCGTTGTGACCCAAATTGGGCCAAGAACCGTAAGAAACTTGCCACTTGCGTTCTCGGTTTCGGCCGAAAAACCACCGGTGGCAAAAGAGGACGTATCTACGTTGTGTCCGACCCTTCAGATAACGACGTTGTTAACCCTAAACCTGGAACCCTTCGATATGCCGCTATTCAAAAACGGCCACTATGGATTATTTTTGGGCGTAGTATGATCATCAGGCTGACTAAGGAATTGATGGTGGCTAGCCACAAGACCATTGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGGGCTGGTCTTAGCATTCAATTCTCTCGAAATGTGATCATCCACGGCCTACACATCCACCACGTCATTTCAGCCACCGGTGGCTTGATCCGAGACGGCGCTAACCATGTTGGCCTCCGAACGGTCAGTGACGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCATCTCTCCATGTCTAACTGCCAAGATGGACTCATCGACGCAATCCAAGGCTCCACTGCAATCACCATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTATTCGGTGCAAGTGATTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTCGGGAAGGGATTGGTGCAGAGAATGCCAAGATGCAGATGGGGATTCTTCCATGTGGTCAACAACGATTACACTCATTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATCGCCCCACCCAACCCTGCTGCAAGACAGATTACCAATAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCGGAAGGGGATCTGATGATGAATGGAGCCTATTTCATTCAGTCCGGGAATCCAAGCAAACGAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACCTTTGTTAGAAGGCTTACTCGCTTCTCTGGCTCACTCAACTGTTATGTTGGTCGCCCATGCTAA 1311 47.9 MMKVVLVLVSMAVLMPTIRASIAEYDDFLLQKAEEAKQASLEAFHPDPMNVTDHFNQQVHLALEGIEGSNSTRRSLAKYNGPCLATNPIDRCWRCDPNWAKNRKKLATCVLGFGRKTTGGKRGRIYVVSDPSDNDVVNPKPGTLRYAAIQKRPLWIIFGRSMIIRLTKELMVASHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHVISATGGLIRDGANHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYVGRPC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29217784 29219362 + ClCG10G014830.1 Cla10g01416 283075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01416 436 Pfam Pectate lyase 171 352 IPR002022 -
Cla10g01416 436 Gene3D - 86 429 IPR012334 -
Cla10g01416 436 SMART amb_all 161 358 IPR002022 -
Cla10g01416 436 SUPERFAMILY Pectin lyase-like 87 426 IPR011050 -
Cla10g01416 436 PANTHER PECTATE LYASE 18-RELATED 3 436 IPR045032 GO:0030570
Cla10g01416 436 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Cla10g01416 436 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Cla10g01416 436 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Cla10g01416 436 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Cla10g01416 436 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Cla10g01416 436 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Cla10g01416 436 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Cla10g01416 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Cla10g01416 436 Pfam Pectate lyase, N terminus 22 76 IPR007524 GO:0030570
Cla10g01416 436 PANTHER PECTATE LYASE 3 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01426 Cla-Chr1:28743312 Cla10g01416 Cla-Chr10:29217784 0 dispersed
Cla08g00903 Cla-Chr8:21501196 Cla10g01416 Cla-Chr10:29217784 0 dispersed
Cla09g01903 Cla-Chr9:36705078 Cla10g01416 Cla-Chr10:29217784 4.42E-162 dispersed
Cla10g01416 Cla-Chr10:29217784 Cla06g00739 Cla-Chr6:9598542 1.57E-164 dispersed
Cla10g01416 Cla-Chr10:29217784 Cla05g02468 Cla-Chr5:36113391 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01416 K01728 - csv:101202789 824.313