Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g01416 | ATGATGAAGGTTGTGTTGGTGTTGGTTTCAATGGCTGTTCTTATGCCAACTATAAGAGCTAGCATTGCTGAATATGATGATTTTTTACTCCAAAAGGCTGAAGAAGCCAAACAAGCTTCTCTTGAAGCCTTCCATCCTGATCCCATGAATGTCACTGACCATTTCAACCAACAAGTTCATTTAGCTTTGGAGGGAATAGAAGGAAGCAATAGTACTAGGAGGAGTCTGGCGAAATATAACGGGCCGTGTTTGGCGACGAACCCGATTGACCGTTGTTGGCGTTGTGACCCAAATTGGGCCAAGAACCGTAAGAAACTTGCCACTTGCGTTCTCGGTTTCGGCCGAAAAACCACCGGTGGCAAAAGAGGACGTATCTACGTTGTGTCCGACCCTTCAGATAACGACGTTGTTAACCCTAAACCTGGAACCCTTCGATATGCCGCTATTCAAAAACGGCCACTATGGATTATTTTTGGGCGTAGTATGATCATCAGGCTGACTAAGGAATTGATGGTGGCTAGCCACAAGACCATTGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGGGCTGGTCTTAGCATTCAATTCTCTCGAAATGTGATCATCCACGGCCTACACATCCACCACGTCATTTCAGCCACCGGTGGCTTGATCCGAGACGGCGCTAACCATGTTGGCCTCCGAACGGTCAGTGACGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCATCTCTCCATGTCTAACTGCCAAGATGGACTCATCGACGCAATCCAAGGCTCCACTGCAATCACCATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTATTCGGTGCAAGTGATTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTCGGGAAGGGATTGGTGCAGAGAATGCCAAGATGCAGATGGGGATTCTTCCATGTGGTCAACAACGATTACACTCATTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATCGCCCCACCCAACCCTGCTGCAAGACAGATTACCAATAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCGGAAGGGGATCTGATGATGAATGGAGCCTATTTCATTCAGTCCGGGAATCCAAGCAAACGAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACCTTTGTTAGAAGGCTTACTCGCTTCTCTGGCTCACTCAACTGTTATGTTGGTCGCCCATGCTAA | 1311 | 47.9 | MMKVVLVLVSMAVLMPTIRASIAEYDDFLLQKAEEAKQASLEAFHPDPMNVTDHFNQQVHLALEGIEGSNSTRRSLAKYNGPCLATNPIDRCWRCDPNWAKNRKKLATCVLGFGRKTTGGKRGRIYVVSDPSDNDVVNPKPGTLRYAAIQKRPLWIIFGRSMIIRLTKELMVASHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHVISATGGLIRDGANHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYVGRPC | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 29217784 | 29219362 | + | ClCG10G014830.1 | Cla10g01416 | 283075 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g01416 | 436 | Pfam | Pectate lyase | 171 | 352 | IPR002022 | - | |
Cla10g01416 | 436 | Gene3D | - | 86 | 429 | IPR012334 | - | |
Cla10g01416 | 436 | SMART | amb_all | 161 | 358 | IPR002022 | - | |
Cla10g01416 | 436 | SUPERFAMILY | Pectin lyase-like | 87 | 426 | IPR011050 | - | |
Cla10g01416 | 436 | PANTHER | PECTATE LYASE 18-RELATED | 3 | 436 | IPR045032 | GO:0030570 | |
Cla10g01416 | 436 | PRINTS | Pollen allergen Amb family signature | 109 | 126 | IPR018082 | - | |
Cla10g01416 | 436 | PRINTS | Pollen allergen Amb family signature | 133 | 158 | IPR018082 | - | |
Cla10g01416 | 436 | PRINTS | Pollen allergen Amb family signature | 169 | 185 | IPR018082 | - | |
Cla10g01416 | 436 | PRINTS | Pollen allergen Amb family signature | 233 | 254 | IPR018082 | - | |
Cla10g01416 | 436 | PRINTS | Pollen allergen Amb family signature | 313 | 332 | IPR018082 | - | |
Cla10g01416 | 436 | PRINTS | Pollen allergen Amb family signature | 335 | 354 | IPR018082 | - | |
Cla10g01416 | 436 | PRINTS | Pollen allergen Amb family signature | 377 | 401 | IPR018082 | - | |
Cla10g01416 | 436 | PRINTS | Pollen allergen Amb family signature | 407 | 430 | IPR018082 | - | |
Cla10g01416 | 436 | Pfam | Pectate lyase, N terminus | 22 | 76 | IPR007524 | GO:0030570 | |
Cla10g01416 | 436 | PANTHER | PECTATE LYASE | 3 | 436 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01426 | Cla-Chr1:28743312 | Cla10g01416 | Cla-Chr10:29217784 | 0 | dispersed | |
Cla08g00903 | Cla-Chr8:21501196 | Cla10g01416 | Cla-Chr10:29217784 | 0 | dispersed | |
Cla09g01903 | Cla-Chr9:36705078 | Cla10g01416 | Cla-Chr10:29217784 | 4.42E-162 | dispersed | |
Cla10g01416 | Cla-Chr10:29217784 | Cla06g00739 | Cla-Chr6:9598542 | 1.57E-164 | dispersed | |
Cla10g01416 | Cla-Chr10:29217784 | Cla05g02468 | Cla-Chr5:36113391 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g01416 | K01728 | - | csv:101202789 | 824.313 |