Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01418 ATGGAGGCGGCGGCTTTGGTACTGAAGAACGAGGAGAATCTGAGAATATGTTGGACAGAAGGTCAAACTCAGGCCATAAGACGTGTCAAGAGACGACGGAGAGACTCAGCCGCCGCCGATCAAACTAATAAGCAGCAGTGTCTAAAGCAACAATCCGATCAAGCTCCGACCACCACTATGAAGCGGAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAACTTTCTTGGAATATGACACAAAAGAAGAAGGGCAAACAAGTTTATCTTGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTATTGGGGTGTAACAACCATCACTAACTTCCCTATATCAGAGTATGAGAAAGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAATACCTCTATCTTGGAACTTACAGCACTCAAGAAGAAGCTGCTCGAGCTTATGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGTTGAAGCCTCCTCCGCCGCCATCCACCGCCCCAAGTGAAGCCCATATGGCAACAGACCCCCACAAGGAGCTCTGCAACTCCAGCTCCATCCCAGCCGAAGAAACTTCACTCTTCAAAAACCATCACTGCGACATTGATTCCTTTCATTCCCTTCAAAAGCAAGAGCTTCTCGAGAGCTGCAATGCTCCGCTCAATGCTTACGCCAGATCTTCTTCTGCATCAGCACTCGACCTCCTTCTTCGATCATCATTTTTCAAGAAACTGGTGGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGGGAAGAGGCGAAGACTCGAGTGCAGCTCGACAGTGTATTTGATGAGTTTGAAGATGTCTTCTGTGACAGAATTACAGATGTACCGTTGGTTTGCAGCTCCAACAAAGAGCTGCAAGAGAGCGAGCTTCATTCTTACTTTAATGGCACATTTCATCGCTTCAAAGCAGCCTGA 1176 46.26 MEAAALVLKNEENLRICWTEGQTQAIRRVKRRRRDSAAADQTNKQQCLKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQVYLGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPSTAPSEAHMATDPHKELCNSSSIPAEETSLFKNHHCDIDSFHSLQKQELLESCNAPLNAYARSSSASALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLDSVFDEFEDVFCDRITDVPLVCSSNKELQESELHSYFNGTFHRFKAA 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29236469 29240954 + ClCG10G014850.2 Cla10g01418 283077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01418 391 ProSiteProfiles AP2/ERF domain profile. 65 131 IPR001471 GO:0003700|GO:0006355
Cla10g01418 391 CDD AP2 64 133 IPR001471 GO:0003700|GO:0006355
Cla10g01418 391 SMART rav1_2 65 137 IPR001471 GO:0003700|GO:0006355
Cla10g01418 391 SMART rav1_2 167 231 IPR001471 GO:0003700|GO:0006355
Cla10g01418 391 MobiDBLite consensus disorder prediction 32 66 - -
Cla10g01418 391 MobiDBLite consensus disorder prediction 40 64 - -
Cla10g01418 391 CDD AP2 166 227 IPR001471 GO:0003700|GO:0006355
Cla10g01418 391 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677
Cla10g01418 391 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700|GO:0006355
Cla10g01418 391 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Cla10g01418 391 SUPERFAMILY DNA-binding domain 64 133 IPR016177 GO:0003677
Cla10g01418 391 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700|GO:0006355
Cla10g01418 391 Pfam AP2 domain 64 123 IPR001471 GO:0003700|GO:0006355
Cla10g01418 391 Pfam AP2 domain 166 217 IPR001471 GO:0003700|GO:0006355
Cla10g01418 391 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 10 376 - -
Cla10g01418 391 Gene3D AP2/ERF domain 166 226 IPR036955 GO:0003700|GO:0006355
Cla10g01418 391 Gene3D AP2/ERF domain 64 133 IPR036955 GO:0003700|GO:0006355
Cla10g01418 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 376 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02244 Cla-Chr5:34097982 Cla10g01418 Cla-Chr10:29236469 1.37E-99 dispersed
Cla06g01263 Cla-Chr6:25861007 Cla10g01418 Cla-Chr10:29236469 1.83E-98 dispersed
Cla08g00891 Cla-Chr8:21378801 Cla10g01418 Cla-Chr10:29236469 2.73E-57 dispersed
Cla10g01418 Cla-Chr10:29236469 Cla11g00873 Cla-Chr11:14128578 3.21E-09 dispersed
Cla10g01418 Cla-Chr10:29236469 Cla08g01641 Cla-Chr8:29034235 1.20E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61898 PF00847 AP2 2.90E-13 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01418 - - csv:101210782 718.768