Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01433 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTCGACACTGAAACCCCCATCAAAATCCAACCCACCACCAAATCTCACCCGTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGGCGCCGCCGCCTCCGCAGGTGGTTTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGCGGTCATGCTCTAGACGGCTGCGGCGAGTTCATGTCATCCCCCACCGCCACCGCCACCGATCCCACCTCCCTCAAATGCGCTGCTTGCGGTTGCCACCGGAATTTCCACCGCCGTGAACCGGAGGATCCAATCGCTACTCCGACGACAACCCATGTCATTGAGTACCAACCCCATCACCGCCACCACCCACCGCCGCCGCCTGCGGCGGCCCACCGGAGCCCGAGTTCCGCCTCCCCCCCTCCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCCTCTCCGGTGGTTTGCCGGAGAACGCCGGCAGCGGTGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATTCAAGAATTCTGTAGCGATGTCGGAGTTGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTCTCGGGAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGTGGCGATGGGGATGGCGACGACAAAATTAACGGCGGTGGCGAGCCACACGCCACCGCAAATGGATCGTCTTCTTCCTCTTGA 891 57.46 MDLTPAISTAAATISTGGGAVKSPEFDTETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMSSPTATATDPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPHHRHHPPPPPAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDDKINGGGEPHATANGSSSSS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29446793 29447683 - ClCG10G015010.1 Cla10g01433 283092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01433 296 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Cla10g01433 296 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 198 255 IPR006455 -
Cla10g01433 296 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 269 - -
Cla10g01433 296 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 269 - -
Cla10g01433 296 SUPERFAMILY Homeodomain-like 191 259 IPR009057 -
Cla10g01433 296 MobiDBLite consensus disorder prediction 16 59 - -
Cla10g01433 296 Gene3D - 191 259 - -
Cla10g01433 296 MobiDBLite consensus disorder prediction 131 159 - -
Cla10g01433 296 MobiDBLite consensus disorder prediction 254 296 - -
Cla10g01433 296 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Cla10g01433 296 MobiDBLite consensus disorder prediction 30 44 - -
Cla10g01433 296 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00822 Cla-Chr10:18738109 Cla10g01433 Cla-Chr10:29446793 4.78E-47 dispersed
Cla10g01433 Cla-Chr10:29446793 Cla11g00012 Cla-Chr11:134411 4.32E-54 dispersed
Cla04g01022 Cla-Chr4:25332463 Cla10g01433 Cla-Chr10:29446793 1.23E-42 transposed
Cla10g01433 Cla-Chr10:29446793 Cla05g02443 Cla-Chr5:35886866 6.49E-59 wgd
Cla10g01433 Cla-Chr10:29446793 Cla09g01783 Cla-Chr9:35222422 1.90E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61900 PF04770 ZF-HD_dimer 7.50E-29 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01433 - - csv:101204974 490.345