Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01435 ATGGCGAGAGAGATCCCAAAATCTAGCAATGAAGAAGCGTTCATCTCCTTGGGAAGCGAATACTCCGATCCTCAACAATCCTTCTTCCGCGACCGATTTTACGAACTTTACCCTCCGGAGTTCTCAAGAAAGCTTGTGGCGGAGGTGATTGCGACGTATTTGCTTGTGTTCGTGACGTGTGGGGCGGCGGCATTGAGTGTTGGTCATGAACGGGAAGTGTCGAAGCTTGGAGCATCGATTTCCGGTGGACTGATTGTGACGGTGATGATTTACGCCGTCGGACATATCTCCGGCGCCCATATGAATCCGGCCGTTACTTTTGCTTTTGCTGCTGTTCGGCGATTTCCATGGAACCAGGTTCCACTGTATGCAGCAGCTCAATTCAGTGGAGCTACAACAGCAGCCTTTACATTGCGCATATTATTGGACCCAATTCAAGACTTAGGTACAACTTCACCTTCTGGACCAGCGTCTAAAGCACTCCTCATGGAGATTGTTGTCTCATTCTGTATGATGTTTGTCACATCTGCGGTTGCTACCGACACAAAAGCTATAGGAGAGCTTGGAGGCATAGCAGTGGGGTCAGCTGTATGTATCACATCCATCTTTGCTGGGCCAATATCGGGTGGGTCGATGAACCCAGCAAGGTCAATTGGACCAGCGATTGCAAGTTCACATTACGAAGGGATTTGGGTGTACTTGGTCGGCCCAGTTACTGGTACATTGCTTGGGGCATTTTCATATAACTTCGTACGAGCCACTGAAAAACATACCCATCCACTCTCTTTACATTGA 795 48.68 MAREIPKSSNEEAFISLGSEYSDPQQSFFRDRFYELYPPEFSRKLVAEVIATYLLVFVTCGAAALSVGHEREVSKLGASISGGLIVTVMIYAVGHISGAHMNPAVTFAFAAVRRFPWNQVPLYAAAQFSGATTAAFTLRILLDPIQDLGTTSPSGPASKALLMEIVVSFCMMFVTSAVATDTKAIGELGGIAVGSAVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYLVGPVTGTLLGAFSYNFVRATEKHTHPLSLH 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29506057 29509936 - ClCG10G015030.1 Cla10g01435 283094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01435 264 PANTHER AQUAPORIN NIP2-1 17 262 IPR034294 -
Cla10g01435 264 PRINTS Major intrinsic protein family signature 194 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01435 264 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01435 264 PRINTS Major intrinsic protein family signature 231 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01435 264 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01435 264 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01435 264 PRINTS Major intrinsic protein family signature 163 181 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01435 264 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 17 262 - -
Cla10g01435 264 Pfam Major intrinsic protein 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla10g01435 264 Gene3D Glycerol uptake facilitator protein. 18 260 IPR023271 -
Cla10g01435 264 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Cla10g01435 264 SUPERFAMILY Aquaporin-like 34 258 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01171 Cla-Chr5:12728940 Cla10g01435 Cla-Chr10:29506057 1.56E-32 dispersed
Cla10g01435 Cla-Chr10:29506057 Cla09g00167 Cla-Chr9:1719283 1.46E-22 dispersed
Cla10g01435 Cla-Chr10:29506057 Cla10g01436 Cla-Chr10:29546651 6.02E-129 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01435 K09874 - csv:101205456 424.091