Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01453 ATGGAACCCAATACCATCACCAATTACGTCGCCGCTTCTCCGGCCACTCCTCAGCTTCCATCTTCTTTACCTATTCTCACACCCGGTGACGATAACACCGCCGCTGTTGATCATGACCACGATTCTTCTTCTTCAAGCTTGTCCCCGGAAGCCAATATCGATGGGGATGCTGAAGATCTGGAGGTCGATAAGATACCCATTTGCTTTATTGCCGATATCTTTGCTGCTTTTATATTGCTTCTATTCATTTTATTTACCAATTTGGAAAGCCTGTTTTGTTTACTTAATTTAGTGATGCAGAAATGCTGCTTTGATGCTTTCAGAATTTGGGTTAAAGTTATTGAGTTTGTTAGGAGTTTATTGAGATATCTTTTGAACTTGTGTCACTGTGGTAGAGGTTTGTTGCTTAAATTTGGTAATGAGACTATAAGAGGAAAATCAGGTGGAACTAAGCTGGAAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGCGATGGAGATGGAGGCTTATCTGTTTCGACCGAAGAGTTTACTAATTCGGATACTTCTGCAGTGAGATCAGAGAATTCTAAAGTACTTTCTGGTGAGGAAAGTAATCCGTCAAGTACTACAAAGACTGATGAACAGAATGAAACAAGTAACTCGCAAGAGAAGACTCTCAAGAAACCCGACAAGATACTTCCGTGCCCCCGCTGTAACAGCATGGATACCAAGTTCTGTTATTATAATAACTACAATGTCAATCAACCGCGCCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGAGGGACAATGAGGAATGTTCCTGTGGGTGCCGGACGTCGTAAGAACAAAAGCTCTGCTTCTCACCATCGTCAGATTATTGTTTCAGAATCGCTTCAGCATGCTCGGACTGATGTTTCTAATGGTATCCATCATTCTGCCCTCAAACCTAATGGCAATGTATTGGCATTTGGTTCAGATGCCCCTCTTTGTGAATCAATGGCTTCCATTTTGAACATTGCTGATAAAACAAGGCAGAATAGTACTAGAAATGGTTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAATGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACTCCATCATTTATAAATAATGAAGAAGGCAAAACTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGCTTTTTACCTCCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCTCTCCTGTTCCACCTCCTACTTTCTATCCACCAGGCATCCCTATGCCGTTCTATCCGACCGCCCCGTTTTGGGGTTGTACCGTTCCCGGCGCCTGGACAGTCCCGTGGGTTTCCCAGCCACCATCTCTGAGCCCTGTTGCCCAAAACCATGCTCCCAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGACCAAGCAAAGCGATTTTGGGGAAGACGAGCAGCAGAAAGATAACAAAGCTGAGAGATGTCTTTGGATACCAAAAACGTTGAGGATTGACGACCCCGGCGAAGCAGCTAAAAGCTCCATATGGGCAACTCTGGGAATAAAAAATGACAAGACTGATTCAGTCAGTGAAGGGCTTTTCAAGGCTTTTCAATCAAAGAAGACCAACGGAAAGAATCACAAAGCCGAAGCCTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCCAGATCAATCAAATTTCATGAAAGCTCGTAA 1776 43.86 MEPNTITNYVAASPATPQLPSSLPILTPGDDNTAAVDHDHDSSSSSLSPEANIDGDAEDLEVDKIPICFIADIFAAFILLLFILFTNLESLFCLLNLVMQKCCFDAFRIWVKVIEFVRSLLRYLLNLCHCGRGLLLKFGNETIRGKSGGTKLEDGDGDGDGDGDGDGDGDGDGGLSVSTEEFTNSDTSAVRSENSKVLSGEESNPSSTTKTDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHHRQIIVSESLQHARTDVSNGIHHSALKPNGNVLAFGSDAPLCESMASILNIADKTRQNSTRNGFQKPEALKIPVAYENGENDDQSQESAATPSFINNEEGKTGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPQWSSPVPPPTFYPPGIPMPFYPTAPFWGCTVPGAWTVPWVSQPPSLSPVAQNHAPNSPTLGKHSRDENVTKQSDFGEDEQQKDNKAERCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKTNGKNHKAEASPVLQVNPAALSRSIKFHESS 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29720622 29723588 - ClCG10G015210.2 Cla10g01453 283112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01453 591 ProSiteProfiles Zinc finger Dof-type profile. 232 286 IPR003851 GO:0003677|GO:0006355
Cla10g01453 591 PANTHER CYCLIC DOF FACTOR 2 183 590 IPR045174 GO:0003700|GO:0006355
Cla10g01453 591 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 183 590 - -
Cla10g01453 591 MobiDBLite consensus disorder prediction 369 393 - -
Cla10g01453 591 MobiDBLite consensus disorder prediction 216 230 - -
Cla10g01453 591 MobiDBLite consensus disorder prediction 489 511 - -
Cla10g01453 591 MobiDBLite consensus disorder prediction 177 215 - -
Cla10g01453 591 MobiDBLite consensus disorder prediction 470 511 - -
Cla10g01453 591 MobiDBLite consensus disorder prediction 147 232 - -
Cla10g01453 591 MobiDBLite consensus disorder prediction 470 488 - -
Cla10g01453 591 ProSitePatterns Zinc finger Dof-type signature. 234 270 IPR003851 GO:0003677|GO:0006355
Cla10g01453 591 Pfam Dof domain, zinc finger 229 286 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01453 - - - cmo:103486992 841.262
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01194 Cla-Chr4:27094213 Cla10g01453 Cla-Chr10:29720622 6.45E-100 dispersed
Cla10g01453 Cla-Chr10:29720622 Cla01g00029 Cla-Chr1:197749 1.36E-25 dispersed
Cla10g01519 Cla-Chr10:30481283 Cla10g01453 Cla-Chr10:29720622 2.48E-69 transposed
Cla10g01453 Cla-Chr10:29720622 Cla05g02435 Cla-Chr5:35837765 9.80E-98 wgd
Cla10g01453 Cla-Chr10:29720622 Cla06g01588 Cla-Chr6:29416844 8.59E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1560 . . . . Bpe02g01453 Bpe14g00173 . . Cmo14g00585 Cmo11g01039 . Cma14g00586 Car11g00855 . . Cpe03g00467 . . . . . . . . Cla10g01453 Cam10g1162 Cec10g1537 Cco10g1513 Clacu10g1511 Cmu10g2275 Cre10g1660 . . . . . Csa05g02462 Chy04g01555 Cme04g01994 Blo17g00365 Blo18g00391 . . . . Bma01g01039 Bma02g00393 . . . . . . . Cpe04g00052 . Bhi11g02870 . . . Hepe05g0758 . . . . . . . . . . Csa03g03750 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla03g00724 CCT 17 179 C2C2-Dof Transcription Factor Family AT1G29160 58.0 8.1e-45 177.2
Cla01g02318 CCT 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.0 7.8e-40 160.6
Cla01g00159 . 17 104 C2C2-Dof Transcription Factor Family AT1G64620 75.8 7.3e-37 151.8
Cla03g00724 CCT 17 179 C2C2-Dof Transcription Factor Family AT2G34140 55.6 2.5e-43 172.2
Cla10g02000 CCT,ECH 64 196 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.3e-40 164.1
Cla09g01940 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.1e-38 156.8
Cla03g00153 CCT,ECH 93 167 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.2e-37 152.1
Cla06g01588 CCT,ECH 185 536 C2C2-Dof Transcription Factor Family AT3G47500 53.4 6.1e-89 325.1
Cla01g00159 . 17 102 C2C2-Dof Transcription Factor Family AT4G24060 79.2 9.9e-39 157.9
Cla10g01453 . 212 591 C2C2-Dof Transcription Factor Family AT5G39660 53.7 2.8e-81 299.7
Cla10g02000 CCT,ECH 64 196 C2C2-Dof Transcription Factor Family AT5G02460 67.3 1.4e-39 161.0
Cla03g00153 CCT,ECH 94 167 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.7e-38 155.6
Cla09g01940 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 61.4 1.4e-36 151.0
Cla10g02000 CCT,ECH 117 199 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.0e-37 153.7
Cla02g01976 CCT,ECH 195 343 C2C2-Dof Transcription Factor Family AT3G55370 54.0 5.9e-37 152.1
Cla04g00818 CCT,ECH 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.3e-36 151.0
Cla06g01522 . 28 324 C2C2-Dof Transcription Factor Family AT5G60850 53.3 1.5e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008734 0 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61901 PF02701 zf-Dof 2.70E-32 No_clan Cla TF