Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g01471 | ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGATAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGGAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATCACTGATCATGTACTAGCAATGTCATTCCCTGCAGAACGTATGCGCGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTACTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCATATGATCCATCACATTTTCATGGGCGGGTGGAGTCGTTTCCTTTCGATGATAATCATGTTCCACCTCTACAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGCTATCGTCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTCTGTGCCTACTTGGTTTACTGTGGCATGTCAGCGGAGGATGCACTTCAGCTGTATGCTCAGAGGCGGACGACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGGTACGTGGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAATTTATAATGGACCACCTGAGGTGAAGTTGCCCGAACCATGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATTGCAGGAGGTTCCTTCTCAACTATATCGTCCATCTATGGAACTTACCAGGAATTGTTGCAGACAATTTAAGAGAGGATATGAGAGGAGTAACAGTCCTTGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCCCATCTTATTGTTCAAATGGATACCGAGTGTTCCGCACTATACCACAAAACCTGCCTTGACTACAATTTCGAGAAGCCTCTACCACTAACTGGAGATGTTCGCATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCCTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCACTTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCAAAACACTCGTTTTCGAATTCATCCGATGACGAAGATCCTCAAAATGATTTCTCTTAA | 1248 | 43.43 | MGIKFSKPNQGKVDNLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSAEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGIYNGPPEVKLPEPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMELTRNCCRQFKRGYERSNSPCYFLSFVEGENEGNKSEVEPHLIVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSLCGPSFCLELVFGPANAKHSFSNSSDDEDPQNDFS | 415 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 29933089 | 29937405 | + | ClCG10G015410.1 | Cla10g01471 | 283130 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g01471 | 415 | Gene3D | - | 284 | 397 | - | - | |
| Cla10g01471 | 415 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 1 | 407 | - | - | |
| Cla10g01471 | 415 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 292 | 394 | IPR035892 | - | |
| Cla10g01471 | 415 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 49 | 207 | IPR029021 | - | |
| Cla10g01471 | 415 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 129 | 184 | IPR000387 | GO:0016311|GO:0016791 | |
| Cla10g01471 | 415 | Gene3D | Protein tyrosine phosphatase superfamily | 28 | 209 | IPR029021 | - | |
| Cla10g01471 | 415 | SMART | PTEN_C2_2 | 223 | 394 | IPR014020 | - | |
| Cla10g01471 | 415 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 41 | 210 | IPR029023 | - | |
| Cla10g01471 | 415 | Pfam | Tyrosine phosphatase family | 146 | 186 | IPR026893 | GO:0004721 | |
| Cla10g01471 | 415 | CDD | PTP_PTEN | 51 | 205 | IPR045101 | GO:0016791 | |
| Cla10g01471 | 415 | ProSiteProfiles | C2 tensin-type domain profile. | 241 | 395 | IPR014020 | - | |
| Cla10g01471 | 415 | Pfam | C2 domain of PTEN tumour-suppressor protein | 318 | 392 | IPR014020 | - | |
| Cla10g01471 | 415 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 149 | 159 | IPR016130 | GO:0016311|GO:0016791 | |
| Cla10g01471 | 415 | PANTHER | BNAC03G16750D PROTEIN | 1 | 407 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01668 | Cla-Chr1:31569197 | Cla10g01471 | Cla-Chr10:29933089 | 1.59E-44 | dispersed | |
| Cla10g01471 | Cla-Chr10:29933089 | Cla02g00625 | Cla-Chr2:6960842 | 1.86E-47 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g01471 | K01110 | - | csv:101212127 | 815.839 |