Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01471 ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGATAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGGAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATCACTGATCATGTACTAGCAATGTCATTCCCTGCAGAACGTATGCGCGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTACTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCATATGATCCATCACATTTTCATGGGCGGGTGGAGTCGTTTCCTTTCGATGATAATCATGTTCCACCTCTACAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGCTATCGTCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTCTGTGCCTACTTGGTTTACTGTGGCATGTCAGCGGAGGATGCACTTCAGCTGTATGCTCAGAGGCGGACGACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGGTACGTGGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAATTTATAATGGACCACCTGAGGTGAAGTTGCCCGAACCATGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATTGCAGGAGGTTCCTTCTCAACTATATCGTCCATCTATGGAACTTACCAGGAATTGTTGCAGACAATTTAAGAGAGGATATGAGAGGAGTAACAGTCCTTGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCCCATCTTATTGTTCAAATGGATACCGAGTGTTCCGCACTATACCACAAAACCTGCCTTGACTACAATTTCGAGAAGCCTCTACCACTAACTGGAGATGTTCGCATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCCTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCACTTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCAAAACACTCGTTTTCGAATTCATCCGATGACGAAGATCCTCAAAATGATTTCTCTTAA 1248 43.43 MGIKFSKPNQGKVDNLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSAEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGIYNGPPEVKLPEPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMELTRNCCRQFKRGYERSNSPCYFLSFVEGENEGNKSEVEPHLIVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSLCGPSFCLELVFGPANAKHSFSNSSDDEDPQNDFS 415
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 29933089 29937405 + ClCG10G015410.1 Cla10g01471 283130
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01471 415 Gene3D - 284 397 - -
Cla10g01471 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 407 - -
Cla10g01471 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 292 394 IPR035892 -
Cla10g01471 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Cla10g01471 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 184 IPR000387 GO:0016311|GO:0016791
Cla10g01471 415 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Cla10g01471 415 SMART PTEN_C2_2 223 394 IPR014020 -
Cla10g01471 415 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Cla10g01471 415 Pfam Tyrosine phosphatase family 146 186 IPR026893 GO:0004721
Cla10g01471 415 CDD PTP_PTEN 51 205 IPR045101 GO:0016791
Cla10g01471 415 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Cla10g01471 415 Pfam C2 domain of PTEN tumour-suppressor protein 318 392 IPR014020 -
Cla10g01471 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Cla10g01471 415 PANTHER BNAC03G16750D PROTEIN 1 407 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01668 Cla-Chr1:31569197 Cla10g01471 Cla-Chr10:29933089 1.59E-44 dispersed
Cla10g01471 Cla-Chr10:29933089 Cla02g00625 Cla-Chr2:6960842 1.86E-47 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01471 K01110 - csv:101212127 815.839