Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01473 ATGGCGACCTCAAAACCCCAAAGGTCACCGGAGGAGGTCGAAGACATTATCCTTCGCAAAGTCTTCCTCATTTCTCTCACTGATTCTTCCGATTCCGATTCCAGAATCGTCTATCTCGAGCAAACCGCTGCCGAACTCCTTAGCGAGGGCAAACAATTGAGGATTTCAAGAGATGTAATGGAGCGCATCATAATCGATCGTCTTTCCGGAAATTTCCCCTCCGCCGAACCCCCTTTTCAGTACCTAATCGGCTGCTACCGTCGAGCTCATGACGAGACTAAGAAAATCGCTTCCATGAAGGATAAGACTTTGCGCTCTCATATTGAAATTTCCCTCAAGCAAGCAAAGAAGTTGACGATTTCGTATTGTAGGATTCATTTAGGGAATCCTGAATTGTTTTCGGGTGCCGATTTAGGTACTAACTCCAATACTTCCCCTTTGCTTCCTTTGATTTTCTCTGAGGTTGGTAGCTCCGTCGATGGATTTGGGGCTAGTACCAGTGTTGGTGGAGCTTTTCAGTGCCCTCCGGGTTTTCTGGAGGAGTTTCTCCGTGATTCCGATTTTGATACATCAGACCCCATCTTGAAGGGGTTGTATGAGGATTTAAGGGGTAGTGTTCTTAAAGTTTCTGCTCTTGGGAACTTCCAGCAGCCCTTAAGAGCACTTAGGTTTCTGGTCAGTTTTCCTGTTGGTGCTAAATCTCTTGTGAATCATCCTTGGTGGATTCCCACTGGTAAATATTCAAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCCTTTCTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTTAAGAGCCAACCTGATGTTGGGCAGCAGTGCTTTTCAGAAGCATCAACTCGTAGACCAGCTGATTTACTATCTTCATTCACTACAATTAAGACAGTCATGAATAACTTATATGATGGCCTTGCAGAAGTTCTTCTCTCCCTTCTTAAGAACACAGAGACCCGTGAAAATGTTCTTGAGTATCTTGCAGAGGTGATAAATAGAAACTCATCCAGGGCTCATATACAGGTTGATCCTCTCTCCTGTGCAAGTTCGGGCATGTTCGTTAATCTCAGTGCCATCATGCTACGTCTCTGTGAGCCATTTCTAGATGCAAACTTGACCAAAAGGGATAAGATTGATCCAAAATATGTATGTTATAGTAACCGCTTGGAATTGAGAGGATTAACTGCTCTACATGCTTCATCGGAAGAAGTTACCGAGTGGATTAATAATGGTACTCAGTTGAGAACTGATAACTCCGGGCAGTTCAGCGACAATGAAAGTCGCCTGCTACAATCTCAAGAAGCTTCCAGTTCAGGCAGTAATGCTACTATTGGATCTTCTACTGCAAAAGCAAGATCGAGTAATGATAAAAGTAGGTACCCTTTCATATGCGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGTCCACGCTCAAAGCCATGCAGGGACAAGGGCCCGCCCCACAGCTTGAAATGGATATAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAAATACTAAGGGATGGGTCACTAATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTCGTCTGGTTAGTTGGTTTGGTTGGTGGATTTAAAATGCCTCTTCCATCAACTTGCCCAATGGAATTTGCATCCATGCCAGAACATTTTGTGGAAGATGCAATGGAATTGCTTATATTTGCTTCTCGGATTCCAAAAGCTTTGGATGGTATCAATTTGGATGATTTTATGAACTTCATTATTATGTTTATGGCAAGTCCGGAATATATCAGAAATCCCTACTTAAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATTCCTCGTAGAGGTGGTTCATCCGTTACAGCAACATTATTTGAAGGCCACCAACTATCGCTTGAGTATCTTGTTAGGAATCTCTTAAAGCTCTATGTAGACATTGAGTTCACTGGTTCACATACACAGTTTTATGACAAGTTCAACATCCGTCATAACATTGCCGAACTTCTCGAATACCTTTGGCAGGTTCCTAGTCATCGCAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTGAACTTCCTAATCAATGATAGCATATATCTTCTTGATGAAAGTCTTAATAAGATTCTTGAACTTAAAGAGCTTGAAGCCGAAATGTCAAATACCGCAGAATGGGAACGGCGACCTGCTCAAGAGAGGCAGGAGAGAACTCGGCTGTTTCACTCCCAAGAAAATATCATCCGAATTGATATGAAATTAGCAAATGAGGACGTGAGTATGCTGGCATTTACTTCTGAGCAGATCACGGCTCCTTTCCTACTTCCAGAGATGGTTGAAAGGGTGGCCAGCATGCTTAATTATTTTCTCCTGCAACTTGTTGGTCCTCAGCGAAGATCTCTTAGTCTGAAAGACCCTGAAAAGTATGAATTCCGTCCGAAAGAGTTGCTTAAGCAGATCGTTCACATATATGTTCATCTGGCACGAGGTGATTCGGAGAATATTTTCCCAGCTGCCATTTCAAAGGATGGCCGATCGTACAACGAGCAGTTGTTCAATGCTGCAGCAGTTGTACTTGGACGAATTGGAGAAGATGGTAGGATAATACGCGAGTTTACTGATCTTGGTAACAAAGCCAAGGATGCAGCTTCTGAGGCCATGGATGCTGAAGCTACTCTGGGAGATATACCAGACGAATTCCTCGACCCAATCCAATACACTTTGATGAAGGACCCTGTGATCTTACCTTCTTCAAGGATCACAGTTGACAGACCCGTCATTCAAAGACATCTCCTCAGCGATAGCACTGACCCATTCAACCGGTCTCATCTGACTTCTGACATGCTAATACCGAACGAAGAATTGAAAGCAAGAATTGAAGAATTTATCAGGTCACAAGAACTGAAGAAGCAACTGGATGGAGGAGGAGTTGCAATGCAGAGCAGCAAGGCAACCATCCAACCCACAAGCGGAGAAATGTTGATTGATTGA 3126 43.31 MATSKPQRSPEEVEDIILRKVFLISLTDSSDSDSRIVYLEQTAAELLSEGKQLRISRDVMERIIIDRLSGNFPSAEPPFQYLIGCYRRAHDETKKIASMKDKTLRSHIEISLKQAKKLTISYCRIHLGNPELFSGADLGTNSNTSPLLPLIFSEVGSSVDGFGASTSVGGAFQCPPGFLEEFLRDSDFDTSDPILKGLYEDLRGSVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYSNRLELRGLTALHASSEEVTEWINNGTQLRTDNSGQFSDNESRLLQSQEASSSGSNATIGSSTAKARSSNDKSRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGPAPQLEMDIARLEKEIELYSQEKLCYEAQILRDGSLIQQALTFYRLMVVWLVGLVGGFKMPLPSTCPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRGGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKELLKQIVHIYVHLARGDSENIFPAAISKDGRSYNEQLFNAAAVVLGRIGEDGRIIREFTDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNEELKARIEEFIRSQELKKQLDGGGVAMQSSKATIQPTSGEMLID 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29946129 29953989 - ClCG10G015430.1 Cla10g01473 283132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01473 1041 Coils Coil 519 546 - -
Cla10g01473 1041 MobiDBLite consensus disorder prediction 423 462 - -
Cla10g01473 1041 SUPERFAMILY RING/U-box 933 1011 - -
Cla10g01473 1041 ProSiteProfiles U-box domain profile. 940 1014 IPR003613 GO:0004842|GO:0016567
Cla10g01473 1041 SMART Ubox_2 944 1007 IPR003613 GO:0004842|GO:0016567
Cla10g01473 1041 Pfam U-box domain 941 1011 IPR003613 GO:0004842|GO:0016567
Cla10g01473 1041 PANTHER UBIQUITINATION FACTOR E4 1 1018 IPR045132 GO:0000151|GO:0030433|GO:0034450
Cla10g01473 1041 CDD RING-Ubox_UBE4A 943 1011 - -
Cla10g01473 1041 PANTHER - 1 1018 - -
Cla10g01473 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 940 1018 IPR013083 -
Cla10g01473 1041 Pfam Ubiquitin elongating factor core 259 924 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01473 K10597 UBE4B, UFD2; ubiquitin conjugation factor E4 B [EC:2.3.2.27] - csv:101211398 1946.01
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01473 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cla02g01224 . 213 810 U-box Gene Family AT2G23140 65.2 9.6e-120 427.9
Cla08g01687 . 1 818 U-box Gene Family AT1G24330 56.7 1.8e-237 819.3
Cla11g01354 . 209 1001 U-box Gene Family AT1G24330 54.3 1.3e-216 750.0
Cla08g01687 . 1 817 U-box Gene Family AT1G67530 56.6 2.2e-235 812.4
Cla11g01354 . 209 1002 U-box Gene Family AT1G67530 53.2 3.4e-212 735.3
Cla01g02188 . 1 362 U-box Gene Family AT4G21350 62.1 2.5e-120 429.1
Cla07g00206 . 135 460 U-box Gene Family AT3G07360 55.3 4.0e-82 302.0
Cla07g00605 CCT 312 499 U-box Gene Family AT1G71020 70.9 8.6e-73 271.6
Cla01g00596 CCT 1056 1255 U-box Gene Family AT1G71020 55.9 3.1e-54 209.9
Cla03g00152 CCT 263 432 U-box Gene Family AT1G71020 57.8 9.6e-48 188.3
Cla05g02163 . 279 444 U-box Gene Family AT1G71020 57.4 6.2e-47 185.7
Cla02g01975 CCT 255 425 U-box Gene Family AT1G71020 57.6 1.1e-46 184.9
Cla07g00605 CCT 63 703 U-box Gene Family AT1G23030 56.6 6.6e-110 395.2
Cla01g00596 CCT 881 1445 U-box Gene Family AT1G23030 53.3 2.1e-79 293.9
Cla02g01975 CCT 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cla03g00152 CCT 93 637 U-box Gene Family AT2G28830 58.3 1.6e-97 354.0
Cla03g00152 CCT 1 671 U-box Gene Family AT3G46510 66.6 5.0e-164 575.1
Cla02g01975 CCT 3 638 U-box Gene Family AT3G46510 66.3 5.9e-157 551.6
Cla05g02163 . 16 653 U-box Gene Family AT3G46510 56.1 1.0e-116 417.9
Cla05g02163 . 12 655 U-box Gene Family AT3G54850 65.6 3.6e-159 558.9
Cla02g01975 CCT 13 628 U-box Gene Family AT3G54850 57.3 2.4e-115 413.3
Cla03g00152 CCT 8 632 U-box Gene Family AT3G54850 55.0 1.7e-100 364.0
Cla02g00969 . 92 684 U-box Gene Family AT5G42340 60.0 2.1e-122 436.8
Cla04g00653 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cla03g00696 . 1 711 U-box Gene Family AT1G29340 68.1 3.4e-246 848.2
Cla05g01204 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Cla04g00523 . 4 422 U-box Gene Family AT3G52450 52.4 3.2e-119 425.6
Cla10g01740 . 1 403 U-box Gene Family AT3G52450 50.7 2.4e-114 409.5
Cla10g01740 . 1 403 U-box Gene Family AT2G35930 55.6 4.7e-120 428.3
Cla04g00523 . 7 422 U-box Gene Family AT2G35930 51.4 3.7e-117 418.7
Cla05g01082 . 9 426 U-box Gene Family AT3G19380 64.1 3.6e-147 518.5
Cla05g01082 . 1 426 U-box Gene Family AT1G49780 64.3 1.1e-151 533.5
Cla01g01528 CCT 1 407 U-box Gene Family AT5G64660 54.2 2.6e-121 432.6
Cla01g01528 CCT 1 407 U-box Gene Family AT5G09800 51.3 6.6e-106 381.3
Cla05g02664 . 1 454 U-box Gene Family AT3G49810 62.6 2.1e-153 539.3
Cla08g01635 . 1 454 U-box Gene Family AT3G49810 61.9 9.6e-151 530.4
Cla08g01635 . 1 454 U-box Gene Family AT5G65920 62.8 4.7e-150 528.1
Cla05g02664 . 1 454 U-box Gene Family AT5G65920 61.3 2.9e-147 518.8
Cla05g00164 CCT 1 918 U-box Gene Family AT2G45910 50.3 8.7e-230 793.9
Cla11g00152 . 4 747 U-box Gene Family AT2G19410 50.6 6.7e-208 721.1
Cla01g00454 . 48 843 U-box Gene Family AT4G25160 50.7 1.0e-217 753.8
Cla06g01636 . 1 478 U-box Gene Family AT5G65200 50.1 2.9e-88 323.2
Cla09g01823 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cla06g01636 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cla01g01396 . 29 498 U-box Gene Family AT5G40140 52.1 2.9e-56 216.9
Cla08g00936 . 77 885 U-box Gene Family AT1G76390 61.2 4.1e-269 924.5
Cla08g00936 . 86 885 U-box Gene Family AT1G20780 61.7 4.8e-278 954.1
Cla08g01687 . 1 820 U-box Gene Family AT1G27910 59.6 1.4e-261 899.4
Cla11g01354 . 209 1013 U-box Gene Family AT1G27910 57.8 1.1e-247 853.2
Cla01g01716 . 394 985 U-box Gene Family AT5G67530 74.0 3.4e-260 894.4
Cla05g00226 . 77 207 U-box Gene Family AT5G67530 55.7 5.9e-39 159.5
Cla10g01783 . 12 150 U-box Gene Family AT5G67530 50.4 1.1e-37 155.2
Cla05g00413 . 48 530 U-box Gene Family AT1G04510 70.6 3.1e-193 671.8
Cla05g00413 . 48 504 U-box Gene Family AT2G33340 72.5 8.4e-193 670.2
Cla07g00205 . 10 278 U-box Gene Family AT3G07370 66.9 3.0e-102 368.6
Cla10g01473 . 1 1041 U-box Gene Family AT5G15400 76.0 0.0e+00 1577.0
Cla02g01224 . 213 810 U-box Gene Family AT2G23140 65.2 9.6e-120 427.9
Cla08g01687 . 1 818 U-box Gene Family AT1G24330 56.7 1.8e-237 819.3
Cla11g01354 . 209 1001 U-box Gene Family AT1G24330 54.3 1.3e-216 750.0
Cla08g01687 . 1 817 U-box Gene Family AT1G67530 56.6 2.2e-235 812.4
Cla11g01354 . 209 1002 U-box Gene Family AT1G67530 53.2 3.4e-212 735.3
Cla01g02188 . 1 362 U-box Gene Family AT4G21350 62.1 2.5e-120 429.1
Cla07g00206 . 135 460 U-box Gene Family AT3G07360 55.3 4.0e-82 302.0
Cla07g00605 CCT 312 499 U-box Gene Family AT1G71020 70.9 8.6e-73 271.6
Cla01g00596 CCT 1056 1255 U-box Gene Family AT1G71020 55.9 3.1e-54 209.9
Cla03g00152 CCT 263 432 U-box Gene Family AT1G71020 57.8 9.6e-48 188.3
Cla05g02163 . 279 444 U-box Gene Family AT1G71020 57.4 6.2e-47 185.7
Cla02g01975 CCT 255 425 U-box Gene Family AT1G71020 57.6 1.1e-46 184.9
Cla07g00605 CCT 63 703 U-box Gene Family AT1G23030 56.6 6.6e-110 395.2
Cla01g00596 CCT 881 1445 U-box Gene Family AT1G23030 53.3 2.1e-79 293.9
Cla02g01975 CCT 93 635 U-box Gene Family AT2G28830 50.8 1.3e-99 360.9
Cla03g00152 CCT 93 637 U-box Gene Family AT2G28830 58.3 1.6e-97 354.0
Cla03g00152 CCT 1 671 U-box Gene Family AT3G46510 66.6 5.0e-164 575.1
Cla02g01975 CCT 3 638 U-box Gene Family AT3G46510 66.3 5.9e-157 551.6
Cla05g02163 . 16 653 U-box Gene Family AT3G46510 56.1 1.0e-116 417.9
Cla05g02163 . 12 655 U-box Gene Family AT3G54850 65.6 3.6e-159 558.9
Cla02g01975 CCT 13 628 U-box Gene Family AT3G54850 57.3 2.4e-115 413.3
Cla03g00152 CCT 8 632 U-box Gene Family AT3G54850 55.0 1.7e-100 364.0
Cla02g00969 . 92 684 U-box Gene Family AT5G42340 60.0 2.1e-122 436.8
Cla04g00653 . 9 669 U-box Gene Family AT5G01830 57.4 1.4e-198 689.9
Cla03g00696 . 1 711 U-box Gene Family AT1G29340 68.1 3.4e-246 848.2
Cla05g01204 . 27 442 U-box Gene Family AT5G37490 51.7 1.2e-110 397.1
Cla04g00523 . 4 422 U-box Gene Family AT3G52450 52.4 3.2e-119 425.6
Cla10g01740 . 1 403 U-box Gene Family AT3G52450 50.7 2.4e-114 409.5
Cla10g01740 . 1 403 U-box Gene Family AT2G35930 55.6 4.7e-120 428.3
Cla04g00523 . 7 422 U-box Gene Family AT2G35930 51.4 3.7e-117 418.7
Cla05g01082 . 9 426 U-box Gene Family AT3G19380 64.1 3.6e-147 518.5
Cla05g01082 . 1 426 U-box Gene Family AT1G49780 64.3 1.1e-151 533.5
Cla01g01528 CCT 1 407 U-box Gene Family AT5G64660 54.2 2.6e-121 432.6
Cla01g01528 CCT 1 407 U-box Gene Family AT5G09800 51.3 6.6e-106 381.3
Cla05g02664 . 1 454 U-box Gene Family AT3G49810 62.6 2.1e-153 539.3
Cla08g01635 . 1 454 U-box Gene Family AT3G49810 61.9 9.6e-151 530.4
Cla08g01635 . 1 454 U-box Gene Family AT5G65920 62.8 4.7e-150 528.1
Cla05g02664 . 1 454 U-box Gene Family AT5G65920 61.3 2.9e-147 518.8
Cla05g00164 CCT 1 918 U-box Gene Family AT2G45910 50.3 8.7e-230 793.9
Cla11g00152 . 4 747 U-box Gene Family AT2G19410 50.6 6.7e-208 721.1
Cla01g00454 . 48 843 U-box Gene Family AT4G25160 50.7 1.0e-217 753.8
Cla06g01636 . 1 478 U-box Gene Family AT5G65200 50.1 2.9e-88 323.2
Cla09g01823 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cla06g01636 . 27 477 U-box Gene Family AT5G40140 51.5 2.1e-59 227.3
Cla01g01396 . 29 498 U-box Gene Family AT5G40140 52.1 2.9e-56 216.9
Cla08g00936 . 77 885 U-box Gene Family AT1G76390 61.2 4.1e-269 924.5
Cla08g00936 . 86 885 U-box Gene Family AT1G20780 61.7 4.8e-278 954.1
Cla08g01687 . 1 820 U-box Gene Family AT1G27910 59.6 1.4e-261 899.4
Cla11g01354 . 209 1013 U-box Gene Family AT1G27910 57.8 1.1e-247 853.2
Cla01g01716 . 394 985 U-box Gene Family AT5G67530 74.0 3.4e-260 894.4
Cla05g00226 . 77 207 U-box Gene Family AT5G67530 55.7 5.9e-39 159.5
Cla10g01783 . 12 150 U-box Gene Family AT5G67530 50.4 1.1e-37 155.2
Cla05g00413 . 48 530 U-box Gene Family AT1G04510 70.6 3.1e-193 671.8
Cla05g00413 . 48 504 U-box Gene Family AT2G33340 72.5 8.4e-193 670.2
Cla07g00205 . 10 278 U-box Gene Family AT3G07370 66.9 3.0e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007211 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 1 1 1 37