Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01478 ATGGAGATTCTGAGAAGAAGAGTCGACGGCGGTGTGCTTCTGGTGGCGGCCGCTCTGGTGGTACTGCTGGCGGCGGTACCGGAAGTATCAGCGACACGGTGGACTGTCGGTGGCAACATGGGTTGGACTACCAATGTGAACTACACTATCTGGGCTCAGGGAAAGCACTTCTATTATGATGACTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAGACAGACTATGAGAATTGCAATTCTGATCATCCACTCCACAATTTCACCACTGGAGCTGGAAGAGATGTGGTTCATTTGAATGTGACCAGGCCTTATTACTTCATAAGTGGCAAGGGCTTTTGCTATGGAGGCATGAAGCTCGCTATCCATGTCGAACACCTACCTCCCCCGCCCTCGGCCTCACACTTGAACGAAAAGAGCAGTGCTCTCAGATCTACCTACATTGGCCACACCCCATTTGTTTTAACTGCTGTTTTCGCCATTGCTGCTCTGTACGAAGCTTTAGCCCAGGTCTGGTAG 537 49.91 MEILRRRVDGGVLLVAAALVVLLAAVPEVSATRWTVGGNMGWTTNVNYTIWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYENCNSDHPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVEHLPPPPSASHLNEKSSALRSTYIGHTPFVLTAVFAIAALYEALAQVW 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30004824 30006574 + ClCG10G015480.1 Cla10g01478 283137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01478 178 Pfam Plastocyanin-like domain 42 124 IPR003245 GO:0009055
Cla10g01478 178 PANTHER BLUE COPPER PROTEIN 13 170 IPR039391 GO:0009055
Cla10g01478 178 SUPERFAMILY Cupredoxins 31 130 IPR008972 -
Cla10g01478 178 ProSiteProfiles Phytocyanin domain profile. 32 132 IPR003245 GO:0009055
Cla10g01478 178 Gene3D - 30 133 IPR008972 -
Cla10g01478 178 PANTHER LAMIN-LIKE PROTEIN 13 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01226 Cla-Chr10:26938892 Cla10g01478 Cla-Chr10:30004824 2.52E-33 dispersed
Cla10g01478 Cla-Chr10:30004824 Cla02g00815 Cla-Chr2:10786766 2.54E-17 dispersed
Cla10g01478 Cla-Chr10:30004824 Cla10g01479 Cla-Chr10:30012991 7.42E-33 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01478 - - csv:101210415 318.161