Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01496 ATGAATATGGAGCAGTATCTTCTGAAGGACTTCGAAGTTGAGCCAAAACATCCTTCAGAGGAAGCCTTGAGGAGATGGAGATCTGCCGTCTCTATCGTCAGAAATCGACGACGGAGGTTCCGAAATGTTGCAGATCTCGATAAACGCTCTGAGGCCGAGAAAAAGAAGCTCAAAATCCAGGAAAAAATTCGAGTTGCTCTTTATGTTCAGAAGGCAGCATTACAGTTTATTGATGCCGTGAATCGAGATGAGTACCATCTGTCAGATGAGGCTAGGAGAGCTGGCTATAGTATTCATCCAGATGAGCTTGCATCCATAGTCCGTAGCCATGATTACAAGGCATTGAGATTCCATGGTGGTGTGGAAGGACTTTCAAGGAAAGTTTCTGTTGCACTAGACACAGGTGTCAGTGAAAAAGATACATCCAAGAGACAAGAGATTTATGGTTACAATTGTTACACAGAGAAACCTTCCAGACCCTTTTGGGTGTATGTATGGGAAGCATTACACGACTTGACATTAATCATCCTAATATTTTGTGCACTAATTTCTTTAGGCGTTGGTATTGCCACAGAAGGGTGGCCGAAGGGAACATATGATGGTTTAGGAATTCTACTCAGTATATTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAAGCAGTCTTTGCAATTCAAGGATCTTGACAGGGAGAAGAAAAAAATTTATGTTGATGTCACTAGGGATGGGCTGAGGAAAAAAGTTTCCATTTATGACTTGGTTGTTGGAGATATTGTTCATCTATCCATTGGAGATCAGGTTCCCGCTGATGGGGTTTTCATATCAGGATATAGTCTACTAATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAACATAGATGAGGAGAAACCATTTCTTCTATCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGTATGAAAACTGAATGGGGAAAACTGATGGAAACTCTCAGTGAGGGAGGAGAAGACGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATTGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTCGGAGAAAAAGCTGCTCACCATCAATTTACAAAGTGGACTTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCCGTTGCAGTTACCATAATAGTTGTCGCAGTTCCTGAAGGTTTACCACTGGCAGTGACATTAAGCCTTGCCTTTGCTATGAAGAAATTGATGGATGAAAGAGCACTAGTTAGGCATCTGTCTGCATGTGAAACAATGGGTTCGGTCAGTTGCATTTGCACAGATAAGACTGGGACATTAACCACAAACCATATGATAGTTAGCCGTGCTTGGGTATGTGAAAATTTTATGGAGAATAAAGACCATAGGAGTGTAGACAAATTGAAATCAGAGATCTCTGAAGATGTTTTAGGCATATTTTTGCAGTCCATATTTCAAAATACCAGCTGCGAAGTGACTAAAGATAAAGAGGGGAAGAACTCAATTGTTGGTGGAACACCAACGGAATCAGCACTATTGGAGTTTGGCATCCATTTGGGTGGGGATTTTCGTGCCCAACGTACAGAATATAAGATACTTAAGGTTGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCGCTTCCTAATGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTAAGTATGTGTGACAAGTATATTGATTCCAATGGAGAATCTATCTATTTAACAGAAGAGAAGGTAAATAATGCTACAAATGTTATCACTAGTTTTGCCAATGAAGCCTTGAGGACACTTTGCTTAGCCTTCAAAGATATAGAGGACTCCGGTGACAAATCAATTCCAGATGATGGATATACATTAATTGCAATTGTTGGGATCAAGGATCCTGTACGCCCAGGGGTCAAGGAAGCTGTTAAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACTGGTGACAATATTAATACAGCAAAGGCTATTGCTAAAGAATGTGGTATACTTACAGCCGATGGTTTAGCTATAGAAGGACCAAACTTCCGTAATTTATCTCCAGAACAGATGAAGCAAGTTATACCAAAACTGCAGGTGATGGCTCGGTCCTTGCCGCTGGACAAGTACACATTGGTTAACAATTTGCGGAGTATGGGTGAGGTTGTTGCAGTGACTGGAGATGGGACAAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCCGGAACTGAGGTGGCCAAAGAAAATGCCGATGTGATCATAATGGATGACAATTTTTCAACTATTGTAAATGTTGCGAGATGGGGACGTGCGGTGTACATTAACATACAAAAGTTTGTGCAGTTTCAGCTAACAGTTAACATTGTTGCTCTAGTGATCAATTTCGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTACAGTTGCTTTGGGTGAACTTGATTATGGACACTCTTGGTGCTTTGGCACTGGCCACAGAGCCTCCAAATGATGGACTTATGCAGAGACCTCCAATTCCCAAGGGGGTTAACTTTATTACCAAAGCCATGTGGAGGAACATTATTGGTCAGAGTATCTATCAACTTGCTGTACTGGCAGTTCTTAATTTTGGGGGAAAGCAACTTCTTGGACTTAATGGATCTGATTCCACAAAAGTTCTCAACACTTTGATATTCAACTCATTTGTGTTCTGCCAGGTTTTCAACGAAATTAACAGCCGTGAGATTGAAAAGATCAACATCTTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGGAGTAATGGTATCCACAGTGGGGTTTCAAATAATAATAATAGAACTTTTGGGAGCTTTTGCAAGCACTGTACCACTGAGCTGGGAACTATGGGGACTGAGTGTGTTGATTGGATTTGTGAGCATGCCAGTTGCAGTCGTGTTGAAGTTCATCCCTGTTCGTAAAGAAGTATTCACAGCCCAACATGATGGCTATGAACCAATCCCTTCTGGCCCAGAGCTGGCTTGA 3108 41.7 MNMEQYLLKDFEVEPKHPSEEALRRWRSAVSIVRNRRRRFRNVADLDKRSEAEKKKLKIQEKIRVALYVQKAALQFIDAVNRDEYHLSDEARRAGYSIHPDELASIVRSHDYKALRFHGGVEGLSRKVSVALDTGVSEKDTSKRQEIYGYNCYTEKPSRPFWVYVWEALHDLTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYKQSLQFKDLDREKKKIYVDVTRDGLRKKVSIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVNIDEEKPFLLSGTKVQDGSGKMMVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLGEKAAHHQFTKWTSSDALKLLDFFAVAVTIIVVAVPEGLPLAVTLSLAFAMKKLMDERALVRHLSACETMGSVSCICTDKTGTLTTNHMIVSRAWVCENFMENKDHRSVDKLKSEISEDVLGIFLQSIFQNTSCEVTKDKEGKNSIVGGTPTESALLEFGIHLGGDFRAQRTEYKILKVEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILSMCDKYIDSNGESIYLTEEKVNNATNVITSFANEALRTLCLAFKDIEDSGDKSIPDDGYTLIAIVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTADGLAIEGPNFRNLSPEQMKQVIPKLQVMARSLPLDKYTLVNNLRSMGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVNFITKAMWRNIIGQSIYQLAVLAVLNFGGKQLLGLNGSDSTKVLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFSSWIFLGVMVSTVGFQIIIIELLGAFASTVPLSWELWGLSVLIGFVSMPVAVVLKFIPVRKEVFTAQHDGYEPIPSGPELA 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30188099 30201679 - ClCG10G015660.2 Cla10g01496 283155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01496 1035 Pfam Cation transporting ATPase, C-terminus 837 1011 IPR006068 -
Cla10g01496 1035 Pfam Cation transport ATPase (P-type) 508 592 - -
Cla10g01496 1035 Gene3D - 167 1011 - -
Cla10g01496 1035 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Cla10g01496 1035 Pfam E1-E2 ATPase 235 430 - -
Cla10g01496 1035 Gene3D - 449 797 IPR023214 -
Cla10g01496 1035 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 662 IPR023299 GO:0000166
Cla10g01496 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 718 840 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla10g01496 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 204 483 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla10g01496 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 550 697 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla10g01496 1035 SMART Cation_ATPase_N_a_2 115 189 IPR004014 -
Cla10g01496 1035 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 51 IPR024750 GO:0005516
Cla10g01496 1035 Gene3D - 18 79 - -
Cla10g01496 1035 PANTHER CATION TRANSPORTING ATPASE 5 1020 - -
Cla10g01496 1035 Gene3D - 462 657 IPR023299 GO:0000166
Cla10g01496 1035 SFLD p-type atpase 434 804 IPR044492 -
Cla10g01496 1035 SUPERFAMILY Calcium ATPase, transduction domain A 237 333 IPR008250 -
Cla10g01496 1035 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1014 IPR023298 -
Cla10g01496 1035 SUPERFAMILY HAD-like 451 857 IPR036412 -
Cla10g01496 1035 PANTHER CALCIUM-TRANSPORTING ATPASE 5 1020 - -
Cla10g01496 1035 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Cla10g01496 1035 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Cla10g01496 1035 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Cla10g01496 1035 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Cla10g01496 1035 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Cla10g01496 1035 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Cla10g01496 1035 Gene3D - 134 335 - -
Cla10g01496 1035 SFLD Haloacid Dehalogenase 434 804 - -
Cla10g01496 1035 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cla10g01496 1035 CDD P-type_ATPase_Ca_PMCA-like 142 885 - -
Cla10g01496 1035 PRINTS H+-transporting ATPase (proton pump) signature 611 629 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla10g01496 1035 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla10g01496 1035 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla10g01496 1035 Pfam Cation transporter/ATPase, N-terminus 118 184 IPR004014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01348 Cla-Chr6:26954434 Cla10g01496 Cla-Chr10:30188099 3.41E-20 dispersed
Cla08g01633 Cla-Chr8:28898171 Cla10g01496 Cla-Chr10:30188099 2.72E-89 dispersed
Cla09g00688 Cla-Chr9:6679601 Cla10g01496 Cla-Chr10:30188099 0 dispersed
Cla10g01496 Cla-Chr10:30188099 Cla11g01128 Cla-Chr11:22983121 0 dispersed
Cla11g01161 Cla-Chr11:24336026 Cla10g01496 Cla-Chr10:30188099 2.59E-18 dispersed
Cla01g00803 Cla-Chr1:9377849 Cla10g01496 Cla-Chr10:30188099 0 transposed
Cla01g01720 Cla-Chr1:32122326 Cla10g01496 Cla-Chr10:30188099 0 transposed
Cla03g00170 Cla-Chr3:1863562 Cla10g01496 Cla-Chr10:30188099 1.54E-90 transposed
Cla05g02106 Cla-Chr5:32672272 Cla10g01496 Cla-Chr10:30188099 0 transposed
Cla10g01496 Cla-Chr10:30188099 Cla04g00644 Cla-Chr4:20843465 3.61E-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01496 K01537 - csv:101206199 1867.82