Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01504 ATGGCTTCTTCGTCCTCTGATCCTGGCTTCAAACCCGAACCCGGTGCTTGTAGTGCTGCTGCTGCTGCCGGAAGAGGAACGGCGGAATCTTCCGAGGTTGTAATGGCGAATGATCAGCTTCTACTGTACAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCTAAAGAACGCATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCGATATACCGCGGAGTCACTAGAGCTAAACATAAGAGGAAATTTCCGGGTAGTGCTGATCTGTCCGCAGATGTGGTATACAGGACCATAATTATTGAGTTCATGAGCGCCTGTAAATGGTCTGATGATATTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAGAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGGAGCATATGATGAAGAAGAGGCTGCTGCTAGGGCATACGATCTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGTGGTCTCTCAAGTCGATGGGAGCCTTCATTTGGTCGTACGCCGGGTCCTGATTATGTTAACAGCATAAATTATGGTGCTGGAGATGATCAAGCAACTGAAAGTGAATTTGTCCCCAGCTTCTGCATTGAAAGGAAGATTGACTTAACAAGTCACATTAAGTGGTGGGGGCCCAACAAAACTCGAACGGCCAGTGCTGGCTCGAAGTCATCAGAAGAAGACAAAAATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCGCCCATCCTACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGAGTAAAGAAGGCTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAACGAGAATGATGAGAATGAAAATAAAAACACTGTTAACAAGGCAGATCATGGGAAAGTGGTCGAAACACATACAAGTCATGGTGGTGATCCCAGTGAGAGATTTGGGGTTGCTTTCGGAACAAGTGGTGGATTGCCACTTCAGAGAAATGTGTTCCCCTTGACTCCATTCTTAACAGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGACCCGATTCATTGGACATCTCTCTGTTTTACACCCAGTTATCTGGTGAACATAGTTGGAAGGATAGGAATGGCGGGAAGCTTGCGTTTGGATGACATTGTCCCGCTGTATGTACCCCCAGAAGAGAAGGACCAACAGAACCATGAGCCAAGGTTAACCATGGCCGAAATCGAGCCCCCTCAAGAGAGGGTCCAACAACCCAAGTGA 1491 46.21 MASSSSDPGFKPEPGACSAAAAAGRGTAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRAKHKRKFPGSADLSADVVYRTIIIEFMSACKWSDDIRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSFGRTPGPDYVNSINYGAGDDQATESEFVPSFCIERKIDLTSHIKWWGPNKTRTASAGSKSSEEDKNSCAGEVGSELKALGQTAHPTEPYEMPCLGTLHGVKKAASKVSALSILSRSAAYKSLQEKALKLQEINNENDENENKNTVNKADHGKVVETHTSHGGDPSERFGVAFGTSGGLPLQRNVFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLCFTPSYLVNIVGRIGMAGSLRLDDIVPLYVPPEEKDQQNHEPRLTMAEIEPPQERVQQPK 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30265620 30272135 - ClCG10G015750.2 Cla10g01504 283163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01504 496 MobiDBLite consensus disorder prediction 272 292 - -
Cla10g01504 496 Gene3D AP2/ERF domain 116 177 IPR036955 GO:0003700|GO:0006355
Cla10g01504 496 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Cla10g01504 496 PANTHER BNAA03G19580D PROTEIN 22 85 - -
Cla10g01504 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 85 - -
Cla10g01504 496 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
Cla10g01504 496 PANTHER BNAA03G19580D PROTEIN 117 436 - -
Cla10g01504 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 117 436 - -
Cla10g01504 496 MobiDBLite consensus disorder prediction 1 31 - -
Cla10g01504 496 MobiDBLite consensus disorder prediction 469 496 - -
Cla10g01504 496 ProSiteProfiles AP2/ERF domain profile. 99 175 IPR001471 GO:0003700|GO:0006355
Cla10g01504 496 Coils Coil 341 369 - -
Cla10g01504 496 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01504 Cla-Chr10:30265620 Cla05g02244 Cla-Chr5:34097982 2.76E-51 dispersed
Cla10g01504 Cla-Chr10:30265620 Cla08g01641 Cla-Chr8:29034235 3.46E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61905 PF00847 AP2 1.60E-05 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01504 K09285 - csv:101206434 690.649