Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01505 ATGGCGTCACTGCCACCACACTGCCATCACCGCTCTTCTCACCACCACAAAATCTCCTATCCGGCCGATTTGCCTAGTCGGAGATTGACTTCCACTCTTCCTAAAACCCTCATTATTTGCAAGAATTCGAAGAACGAGTCGGCGTTCGAAGAGAGAAAGCAAGTTTTAGTAGACTACGACAATGGCAAGCACGAAATTCGGAATCTTGTTAACGGGCTCAGAAAACTCGATATTCCCAGGCGGTACCAGTTGCGAGTTGAGGGCGAACGATTCCAGAAGGACTGGACGGTCACTGAGGTCGTTCAAAGGATTCTGAAGCTACAACGCCATGGTGATGTCGAGGCTTTGTTAAATTGCTGGGTTGGACGATTTTCTCGAAAGAATTACCCTGCTCTTATGAAGGAGTTGACTCAAAATGGGTCCATTGAACACTGTGTTCAAGTATTTGATTGGATGAAGAACCAGCGGAATTATTGTGCCCGTAACGATATCTACAATATGATGATAAGGCTGCATGCCAGACATAACCGAATAGATCAAGCGCGTGGTTTGTTTTTTGAAATGCAAAAATGGAGATGCAAACCTGATGTCGAGACCTACAATGCCCTAATCAATGCACATGGTAGAGCAGGCCAATGGCGTTGGGCGATGAATATAATGGAAGACATGCTACGTGCTGCTATCCCTCCTAGTCGATCAACGTTTAATAATTTGATAAATGCATGTGGATCTTGTGGTAATTGGAGAGAAGCTTTGAGAGTATGCAAGAAAATGACAGACAATGGGGTTGGTCCTGATCTTGTGACCCACAATATTGTTCTATCTGCATACAAAAGTGGGGCTCAGTATTTAAAAGCTTTATCATATTTTGAATTGATGAAAGGCACAAACATCCGACCTGACACAACTACACTTAATATTGTGATCCATTGTTTGATAAAGGTCAAACAATATGGACAAGCCATTGAAATCTTTAATTCCATGCGGGAGAAGAGGGCTGAATGTCGTCCTGACGTTGTGACATTCACAAGCATCATTCATCTTTATTCTGTTTGTGGGCAGATTGAAGATTGTAAAGCTGTATTTAGTACAATGCTGGGTGAAGGCATTAAGCCTAACATTGTTTCTTATAATGCTTTAATAAGTGCATATGCATCCCATGGGATGGATAAAGAAGCTTTTTCAGTTTTTGATGAAATGAAAAGTAGTGGTTTTCGTCCGGATGTTGTATCTTATACATCTTTACTTAGTTCATTTGGAAGATCTCAGCAGCCTGCTAGGGCTAGAGAAGTGTTTGATATGATGAAGAGAAACAAATGTAAGCCAAATCTTGTTAGCTACAATGCACTTATAGATGCATATGGATCTAATGGCTACTTACCTCAAGCTGTTGACATCTTACGTGAGATGGAACAAGATGGAATTCATCCAAATGTTGTTTCAATATGCACCCTCTTGGCTGCTTGTGGACGATTTGGTCAAAAGGTGAACATAGATTCCGTACTTTCAGCTGCTGAGCTTCGGGGAATTCATTTGAACACTATTGCATATAATTCAGCTATTGGGAGCTATATGAATATTGGTGAATATGAAAAGGCAATTAATTTGTATAGATCAATGAAGAATAAGAACACCAAACCAGACTCTGTCACATATACTATCTTGATAAGTAGTTGTTGTAGGATGTCAAAATATGAGGAGGCACTCTGCTTTTTCGAAGAAATGGTAGATTTAAGGATTCCGTTGTCCAAAGAGATCTACTCTTCTATGATCTGTGCCTATAGTAAGCAGGGTCAACTTGTGAAAGCAGAATCTTTGTTCAATTCATTGAAGGGGAATGGTTGTTGTCCTGATTTAGTTACATATACAGCAATGATAAATGCATATAGTGCATCTGAGACATGGGAAAAAGCTTGCGCCTTATATCATGAAATGGAAACAAATAACATTCAACTAGATTCTATAGCATGCTCTGCTTTGATGAAAGCATTTAATAAGGGAAACCAGGCCTCCAACGTTCTTGTTCTGGCAGAAATTATGACGGAGAAAGGAATTCCTTTCAACGATGCCAATTTCTTTGAAATGTTGTCAGCTTGTAGCATATTGCGAGATTGGAGGAAAGCAACAGACTTAATAAATCTTATGGAGCCCTCTTTTCATCTTGTTTCACTTGGAACTACTAACCATCTTCTGCAGTTTCTGGGAAAAAGTGGAAAGACGGAGATTATGATGAAGCTGTTCTACAGATTCGTGGCATTGGGATCCAGTTTCAATATTAGTACTTACTCAATCTTGTTGAAGAACCTTTTGTCTGCTGGAAAGTGGAGAAAATACATTGAGGTATTGCAATGGATGAATGATGCTGGAATTCAACCCTCTAATGCAATGTACAATGACATACTTTACTTTGCACAAAATTGTGGTGGTGCTGAGTGTGCTGCAGTCATCAAAGAAAGAGTTGAGGAACATCCAGTGACTTCAACAGCAATGCAGCAGGCTGCACGATGTGGGTCTTCTAGCTTGCAAGAACAGTTGTTTTCCCTCACAAAGATAACCAACTAA 2562 40.2 MASLPPHCHHRSSHHHKISYPADLPSRRLTSTLPKTLIICKNSKNESAFEERKQVLVDYDNGKHEIRNLVNGLRKLDIPRRYQLRVEGERFQKDWTVTEVVQRILKLQRHGDVEALLNCWVGRFSRKNYPALMKELTQNGSIEHCVQVFDWMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAGQWRWAMNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYLKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFNSMREKRAECRPDVVTFTSIIHLYSVCGQIEDCKAVFSTMLGEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKSSGFRPDVVSYTSLLSSFGRSQQPARAREVFDMMKRNKCKPNLVSYNALIDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIAYNSAIGSYMNIGEYEKAINLYRSMKNKNTKPDSVTYTILISSCCRMSKYEEALCFFEEMVDLRIPLSKEIYSSMICAYSKQGQLVKAESLFNSLKGNGCCPDLVTYTAMINAYSASETWEKACALYHEMETNNIQLDSIACSALMKAFNKGNQASNVLVLAEIMTEKGIPFNDANFFEMLSACSILRDWRKATDLINLMEPSFHLVSLGTTNHLLQFLGKSGKTEIMMKLFYRFVALGSSFNISTYSILLKNLLSAGKWRKYIEVLQWMNDAGIQPSNAMYNDILYFAQNCGGAECAAVIKERVEEHPVTSTAMQQAARCGSSSLQEQLFSLTKITN 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30277432 30291975 + ClCG10G015760.2 Cla10g01505 283164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Cla10g01505 853 PANTHER OS07G0213300 PROTEIN 35 801 - -
Cla10g01505 853 Gene3D Tetratricopeptide repeat domain 577 719 IPR011990 GO:0005515
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 550 581 IPR002885 -
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 234 266 IPR002885 -
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 199 231 IPR002885 -
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 516 548 IPR002885 -
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 445 479 IPR002885 -
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 375 409 IPR002885 -
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 268 302 IPR002885 -
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 164 197 IPR002885 -
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 340 374 IPR002885 -
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 586 618 IPR002885 -
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 620 653 IPR002885 -
Cla10g01505 853 TIGRFAM PPR: pentatricopeptide repeat domain 304 331 IPR002885 -
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Cla10g01505 853 Pfam Pentatricopeptide repeat domain 395 457 IPR002885 -
Cla10g01505 853 Pfam Pentatricopeptide repeat domain 466 501 IPR002885 -
Cla10g01505 853 Pfam Pentatricopeptide repeat domain 750 801 IPR002885 -
Cla10g01505 853 Pfam Pentatricopeptide repeat domain 332 384 IPR002885 -
Cla10g01505 853 Pfam PPR repeat 304 331 IPR002885 -
Cla10g01505 853 Pfam PPR repeat 586 615 IPR002885 -
Cla10g01505 853 Pfam PPR repeat 268 295 IPR002885 -
Cla10g01505 853 Pfam PPR repeat 164 193 IPR002885 -
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Cla10g01505 853 SUPERFAMILY TPR-like 506 645 IPR011990 GO:0005515
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Cla10g01505 853 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 35 801 - -
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Cla10g01505 853 MobiDBLite consensus disorder prediction 1 21 - -
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 758 792 IPR002885 -
Cla10g01505 853 Gene3D Tetratricopeptide repeat domain 472 576 IPR011990 GO:0005515
Cla10g01505 853 Gene3D Tetratricopeptide repeat domain 332 402 IPR011990 GO:0005515
Cla10g01505 853 Gene3D Tetratricopeptide repeat domain 259 331 IPR011990 GO:0005515
Cla10g01505 853 Gene3D Tetratricopeptide repeat domain 403 471 IPR011990 GO:0005515
Cla10g01505 853 Gene3D Tetratricopeptide repeat domain 97 258 IPR011990 GO:0005515
Cla10g01505 853 Gene3D Tetratricopeptide repeat domain 720 787 IPR011990 GO:0005515
Cla10g01505 853 Pfam PPR repeat family 617 664 IPR002885 -
Cla10g01505 853 Pfam PPR repeat family 513 561 IPR002885 -
Cla10g01505 853 Pfam PPR repeat family 195 242 IPR002885 -
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Cla10g01505 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00085 Cla10g01505 CCT
Cla04g00085 Cla10g01505 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01505 Cla-Chr10:30277432 Cla01g00689 Cla-Chr1:8121232 1.60E-06 dispersed
Cla11g01625 Cla-Chr11:29923918 Cla10g01505 Cla-Chr10:30277432 5.20E-10 dispersed
Cla10g01505 Cla-Chr10:30277432 Cla02g01383 Cla-Chr2:28248026 7.45E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01505 - - csv:101216296 1543.48