Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01510 ATGGCCGACGCCGACCAATTCCCTCGCCGGAAACCCCTTGGAAATAAGCGAGCCTCCGCAGCCAATAGAAACCCCGACTCCGCCACTGCCACCGTCACCGCCCTGGCTCCTTGTGGCGCATGCAAGTTTCTCAGAAGAAAATGTGTCAGTGGATGTATCTTTGCACCACATTTCGCCTCCGATCAAGGCGCCGCCCGATTCGCTGCCGTGCATAAGGTCTTTGGAGCTAGCAACGTGTCGAAGCTGCTGCTTCATATTCCGGTCAGTCGTCGAAATGACGCTGTTGTTACCATTTCTTATGAGGCTCAGGCCAGATTATCCGACCCTGTCTATGGATGTGTCTCTACTGTCCTTGCCTTACAACAACAGGTGGCATCTCTGCAGGCAGAGCTAGCCGCGGTTCAAGCTCAATTGATAAGCAGCAGGTTGGCATTTGCAGCTGCGATTCAGAACTCACAGCCATCCCAAGTCGGAGCGTTGCAGCCAGCTTACTCTAACAACTCCTCCATCTCCGTCTCCGCCTCTACCTCTGCTCATAATGCAATCAATTTGAGTAGTTTTGCTTCCAATTACGACCTTCCGACCGAGACTGCCCCATCTCCCCATCACCTAGAGCCTCTTCACCTCCCCCATCAACCGATCGAAGATGAGGAAGACGAGGAAAATAGCCAGTTGCCAGCCATCTTCGCCGATTAA 696 53.3 MADADQFPRRKPLGNKRASAANRNPDSATATVTALAPCGACKFLRRKCVSGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQLISSRLAFAAAIQNSQPSQVGALQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPHQPIEDEEDEENSQLPAIFAD 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30343813 30347224 - ClCG10G015810.1 Cla10g01510 283169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01510 231 Pfam Lateral organ boundaries (LOB) domain 37 135 IPR004883 -
Cla10g01510 231 ProSiteProfiles LOB domain profile. 36 138 IPR004883 -
Cla10g01510 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 18 223 - -
Cla10g01510 231 Coils Coil 117 137 - -
Cla10g01510 231 MobiDBLite consensus disorder prediction 1 26 - -
Cla10g01510 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00086 Cla-Chr7:976436 Cla10g01510 Cla-Chr10:30343813 6.63E-53 dispersed
Cla07g00324 Cla-Chr7:3771777 Cla10g01510 Cla-Chr10:30343813 5.58E-41 dispersed
Cla09g00749 Cla-Chr9:7412634 Cla10g01510 Cla-Chr10:30343813 6.79E-48 dispersed
Cla10g01510 Cla-Chr10:30343813 Cla02g01814 Cla-Chr2:33227293 3.30E-39 dispersed
Cla10g01510 Cla-Chr10:30343813 Cla06g00031 Cla-Chr6:357930 2.57E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61907 PF03195 LOB 1.70E-37 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01510 - - csv:101215818 354.755