Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g01510 | ATGGCCGACGCCGACCAATTCCCTCGCCGGAAACCCCTTGGAAATAAGCGAGCCTCCGCAGCCAATAGAAACCCCGACTCCGCCACTGCCACCGTCACCGCCCTGGCTCCTTGTGGCGCATGCAAGTTTCTCAGAAGAAAATGTGTCAGTGGATGTATCTTTGCACCACATTTCGCCTCCGATCAAGGCGCCGCCCGATTCGCTGCCGTGCATAAGGTCTTTGGAGCTAGCAACGTGTCGAAGCTGCTGCTTCATATTCCGGTCAGTCGTCGAAATGACGCTGTTGTTACCATTTCTTATGAGGCTCAGGCCAGATTATCCGACCCTGTCTATGGATGTGTCTCTACTGTCCTTGCCTTACAACAACAGGTGGCATCTCTGCAGGCAGAGCTAGCCGCGGTTCAAGCTCAATTGATAAGCAGCAGGTTGGCATTTGCAGCTGCGATTCAGAACTCACAGCCATCCCAAGTCGGAGCGTTGCAGCCAGCTTACTCTAACAACTCCTCCATCTCCGTCTCCGCCTCTACCTCTGCTCATAATGCAATCAATTTGAGTAGTTTTGCTTCCAATTACGACCTTCCGACCGAGACTGCCCCATCTCCCCATCACCTAGAGCCTCTTCACCTCCCCCATCAACCGATCGAAGATGAGGAAGACGAGGAAAATAGCCAGTTGCCAGCCATCTTCGCCGATTAA | 696 | 53.3 | MADADQFPRRKPLGNKRASAANRNPDSATATVTALAPCGACKFLRRKCVSGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQLISSRLAFAAAIQNSQPSQVGALQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPHQPIEDEEDEENSQLPAIFAD | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30343813 | 30347224 | - | ClCG10G015810.1 | Cla10g01510 | 283169 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g01510 | 231 | Pfam | Lateral organ boundaries (LOB) domain | 37 | 135 | IPR004883 | - | |
Cla10g01510 | 231 | ProSiteProfiles | LOB domain profile. | 36 | 138 | IPR004883 | - | |
Cla10g01510 | 231 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 20 | 18 | 223 | - | - | |
Cla10g01510 | 231 | Coils | Coil | 117 | 137 | - | - | |
Cla10g01510 | 231 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cla10g01510 | 231 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 18 | 223 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla07g00086 | Cla-Chr7:976436 | Cla10g01510 | Cla-Chr10:30343813 | 6.63E-53 | dispersed | |
Cla07g00324 | Cla-Chr7:3771777 | Cla10g01510 | Cla-Chr10:30343813 | 5.58E-41 | dispersed | |
Cla09g00749 | Cla-Chr9:7412634 | Cla10g01510 | Cla-Chr10:30343813 | 6.79E-48 | dispersed | |
Cla10g01510 | Cla-Chr10:30343813 | Cla02g01814 | Cla-Chr2:33227293 | 3.30E-39 | dispersed | |
Cla10g01510 | Cla-Chr10:30343813 | Cla06g00031 | Cla-Chr6:357930 | 2.57E-51 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61907 | PF03195 | LOB | 1.70E-37 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g01510 | - | - | csv:101215818 | 354.755 |