Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla10g01535 | ATGGTTATGGCTACCGATTCCCAATTCCATGTTCTTGCCGTCGATGATAGCCTCATAGATAGAAAACTCATCGAAAGGCTTCTCAAAACCTCCTCCTATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTTGGTCTGATTCAAGAACATCAACATACAAACTTCAAATCCCCTTCTCCTTCTCCTTCTTTTTCCTCCTCCAACAATCATCACCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGTATGCCTGGAATGACTGGCTTCGATTTGCTCAAGAAAGTTAAGATCTGGAAAAATCTGTTTTCCTCTGAATCATCGTCGCTTAGAAACATACCAGTGGTGATAATGTCATCGGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGCGCGGAAGAGTTCTTCCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAGTTGATGGAGGATCAAAATCAAGAAGAAGAAGAAACAACAGCAACAGAGATCGAATTGGAATCGGTAGAAAAAGAAGAAGAAGAGGAAGAGTTTGAGTTTGAGATGAGTAAGAAGAGAAAGGGAGGTGTGGATGAAGAAAGTGTGGAGACGGAGAGAAGAAGAAGAAGGTTCGACAACAATGGCGTCGCGACGGTGATTTGA | 693 | 42.28 | MVMATDSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQHTNFKSPSPSPSFSSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKIWKNLFSSESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLMEDQNQEEEETTATEIELESVEKEEEEEEFEFEMSKKRKGGVDEESVETERRRRRFDNNGVATVI | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 30671838 | 30673384 | - | ClCG10G016090.2 | Cla10g01535 | 283194 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla10g01535 | 230 | MobiDBLite | consensus disorder prediction | 166 | 230 | - | - | |
| Cla10g01535 | 230 | SMART | REC_2 | 9 | 156 | IPR001789 | GO:0000160 | |
| Cla10g01535 | 230 | Gene3D | - | 10 | 224 | - | - | |
| Cla10g01535 | 230 | CDD | REC_typeA_ARR | 11 | 156 | - | - | |
| Cla10g01535 | 230 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 3 | 220 | IPR045279 | GO:0009736 | |
| Cla10g01535 | 230 | ProSiteProfiles | Response regulatory domain profile. | 10 | 161 | IPR001789 | GO:0000160 | |
| Cla10g01535 | 230 | SUPERFAMILY | CheY-like | 8 | 174 | IPR011006 | - | |
| Cla10g01535 | 230 | MobiDBLite | consensus disorder prediction | 172 | 194 | - | - | |
| Cla10g01535 | 230 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR9 | 3 | 220 | - | - | |
| Cla10g01535 | 230 | MobiDBLite | consensus disorder prediction | 195 | 223 | - | - | |
| Cla10g01535 | 230 | Pfam | Response regulator receiver domain | 74 | 150 | IPR001789 | GO:0000160 | |
| Cla10g01535 | 230 | Coils | Coil | 169 | 189 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla04g00444 | Cla10g01535 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g00731 | Cla-Chr1:8525172 | Cla10g01535 | Cla-Chr10:30671838 | 2.97E-72 | dispersed | |
| Cla04g00444 | Cla-Chr4:16664904 | Cla10g01535 | Cla-Chr10:30671838 | 2.60E-75 | dispersed | |
| Cla05g02508 | Cla-Chr5:36447145 | Cla10g01535 | Cla-Chr10:30671838 | 5.33E-42 | dispersed | |
| Cla05g02679 | Cla-Chr5:37970439 | Cla10g01535 | Cla-Chr10:30671838 | 5.27E-36 | dispersed | |
| Cla07g00490 | Cla-Chr7:6980106 | Cla10g01535 | Cla-Chr10:30671838 | 7.14E-51 | dispersed | |
| Cla08g00600 | Cla-Chr8:17908808 | Cla10g01535 | Cla-Chr10:30671838 | 5.82E-50 | dispersed | |
| Cla10g01535 | Cla-Chr10:30671838 | Cla08g01708 | Cla-Chr8:29657849 | 3.18E-13 | dispersed | |
| Cla10g01535 | Cla-Chr10:30671838 | Cla06g01631 | Cla-Chr6:29836743 | 3.00E-45 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61910 | PF00072 | Response_reg | 2.60E-10 | CL0304 | Cla | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla10g01535 | K14492 | - | csv:101220810 | 301.212 |