Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01552 ATGGGTAGTAGAACAGTGAAGATTGGTGCAGACGATTTAAACAAAACGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACAGCCAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATTTCAGACTTTAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCCAGTAGTTCGACTCTGAACAACATCCAATTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTGTCATGGGGTCTCGAACACTGCCATTACAGAAGGAGTCAAATCCAAATTTGGTTTCTACTTCTGGTGGTCCTCGTGAAAATTGGGGAGAGTCTAATATGGCAGATACCAGCACAAGAACTGATACCTCCACAGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCCGCATATGATTCTAGCAACAAATCAAAAGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCTCAAAATCGCGAAGCTGCTAGAAAAAGCCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGACTGAAGCTTACTCAACTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCGATGAGTGGGAATGGGGCCCTAGCATTCGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATGAATGAGCTTAGAGCTGCAGTAAATTCACATGCTGGTGACACTGAACTTCGTACTATTGTAGATAATGTGACTACACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGGCTTTAGATGTAATAAGCCTTGGTAAAAAATCAAGCTCTCTCTACCGACCTGTTGTTTTATTACTTGTCTATTTAATTATAGACCTTTCAATGTCATTTTCAACCATTATGGGTTACGAAGTGGTCGTCTATTCAGATGCTTTTAAGTTAGAGTTACCTTCTCGTAATGCCCGCCTACTTTTGCCACCTTTGAGCTCCACTCAGTCCTCCTCAGATGGTGACACCTCTGACTGTTCTTTCAAATTTTGGAAAGGCAGCGGGAAAGATTCTGAGTTTTCCATGGAACAGCTTCTTGTAAACCAATTAGAGCCTTTGGCTGAGCAGCAGCTAATGGGCATTTGCAACCTGCAACAATTATCACAACAGGCAGAGGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGCCACACCTGCAACGTCGGGATCGTCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGACAGGCTGATAATCTTCGTCAACAAACCCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTTGCAATAAACGACTACTTCTCCCGTCTTAGAGCCCTCAGTTCTCTGTGGCTTGCACGGCCACGAGATTGA 1692 44.15 MGSRTVKIGADDLNKTVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDFRTLEQTLGFHIEDVDLTRNPLYNQIKSSSSTLNNIQFGSLIKPLASTDVNLPTAVMGSRTLPLQKESNPNLVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKALDVISLGKKSSSLYRPVVLLLVYLIIDLSMSFSTIMGYEVVVYSDAFKLELPSRNARLLLPPLSSTQSSSDGDTSDCSFKFWKGSGKDSEFSMEQLLVNQLEPLAEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30926557 30935361 + ClCG10G016250.2 Cla10g01552 283211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01552 563 MobiDBLite consensus disorder prediction 109 143 - -
Cla10g01552 563 Coils Coil 201 228 - -
Cla10g01552 563 PANTHER TRANSCRIPTION FACTOR TGA9 418 563 - -
Cla10g01552 563 PANTHER TRANSCRIPTION FACTOR TGA9 72 338 - -
Cla10g01552 563 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700|GO:0006355
Cla10g01552 563 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 418 563 - -
Cla10g01552 563 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 72 338 - -
Cla10g01552 563 MobiDBLite consensus disorder prediction 109 183 - -
Cla10g01552 563 ProSiteProfiles DOG1 domain profile. 247 560 IPR025422 GO:0006351|GO:0043565
Cla10g01552 563 Pfam bZIP transcription factor 181 222 IPR004827 GO:0003700|GO:0006355
Cla10g01552 563 Gene3D - 181 233 - -
Cla10g01552 563 SMART brlzneu 178 241 IPR004827 GO:0003700|GO:0006355
Cla10g01552 563 MobiDBLite consensus disorder prediction 144 159 - -
Cla10g01552 563 Pfam Seed dormancy control 265 338 IPR025422 GO:0006351|GO:0043565
Cla10g01552 563 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700|GO:0006355
Cla10g01552 563 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
Cla10g01552 563 CDD bZIP_HBP1b-like 182 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01072 Cla-Chr8:23407805 Cla10g01552 Cla-Chr10:30926557 4.66E-22 dispersed
Cla10g01552 Cla-Chr10:30926557 Cla10g01652 Cla-Chr10:32179883 1.79E-46 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61911 PF14144 DOG1 1.00E-28 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01552 K14431 - csv:101219149 620.542