Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g01552 | ATGGGTAGTAGAACAGTGAAGATTGGTGCAGACGATTTAAACAAAACGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACAGCCAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATTTCAGACTTTAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCCAGTAGTTCGACTCTGAACAACATCCAATTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTGTCATGGGGTCTCGAACACTGCCATTACAGAAGGAGTCAAATCCAAATTTGGTTTCTACTTCTGGTGGTCCTCGTGAAAATTGGGGAGAGTCTAATATGGCAGATACCAGCACAAGAACTGATACCTCCACAGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCCGCATATGATTCTAGCAACAAATCAAAAGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCTCAAAATCGCGAAGCTGCTAGAAAAAGCCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGACTGAAGCTTACTCAACTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCGATGAGTGGGAATGGGGCCCTAGCATTCGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATGAATGAGCTTAGAGCTGCAGTAAATTCACATGCTGGTGACACTGAACTTCGTACTATTGTAGATAATGTGACTACACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGGCTTTAGATGTAATAAGCCTTGGTAAAAAATCAAGCTCTCTCTACCGACCTGTTGTTTTATTACTTGTCTATTTAATTATAGACCTTTCAATGTCATTTTCAACCATTATGGGTTACGAAGTGGTCGTCTATTCAGATGCTTTTAAGTTAGAGTTACCTTCTCGTAATGCCCGCCTACTTTTGCCACCTTTGAGCTCCACTCAGTCCTCCTCAGATGGTGACACCTCTGACTGTTCTTTCAAATTTTGGAAAGGCAGCGGGAAAGATTCTGAGTTTTCCATGGAACAGCTTCTTGTAAACCAATTAGAGCCTTTGGCTGAGCAGCAGCTAATGGGCATTTGCAACCTGCAACAATTATCACAACAGGCAGAGGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGCCACACCTGCAACGTCGGGATCGTCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGACAGGCTGATAATCTTCGTCAACAAACCCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTTGCAATAAACGACTACTTCTCCCGTCTTAGAGCCCTCAGTTCTCTGTGGCTTGCACGGCCACGAGATTGA | 1692 | 44.15 | MGSRTVKIGADDLNKTVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDFRTLEQTLGFHIEDVDLTRNPLYNQIKSSSSTLNNIQFGSLIKPLASTDVNLPTAVMGSRTLPLQKESNPNLVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKALDVISLGKKSSSLYRPVVLLLVYLIIDLSMSFSTIMGYEVVVYSDAFKLELPSRNARLLLPPLSSTQSSSDGDTSDCSFKFWKGSGKDSEFSMEQLLVNQLEPLAEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD | 563 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30926557 | 30935361 | + | ClCG10G016250.2 | Cla10g01552 | 283211 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g01552 | 563 | MobiDBLite | consensus disorder prediction | 109 | 143 | - | - | |
Cla10g01552 | 563 | Coils | Coil | 201 | 228 | - | - | |
Cla10g01552 | 563 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 418 | 563 | - | - | |
Cla10g01552 | 563 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 72 | 338 | - | - | |
Cla10g01552 | 563 | SUPERFAMILY | Leucine zipper domain | 182 | 225 | IPR046347 | GO:0003700|GO:0006355 | |
Cla10g01552 | 563 | PANTHER | TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 | 418 | 563 | - | - | |
Cla10g01552 | 563 | PANTHER | TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 | 72 | 338 | - | - | |
Cla10g01552 | 563 | MobiDBLite | consensus disorder prediction | 109 | 183 | - | - | |
Cla10g01552 | 563 | ProSiteProfiles | DOG1 domain profile. | 247 | 560 | IPR025422 | GO:0006351|GO:0043565 | |
Cla10g01552 | 563 | Pfam | bZIP transcription factor | 181 | 222 | IPR004827 | GO:0003700|GO:0006355 | |
Cla10g01552 | 563 | Gene3D | - | 181 | 233 | - | - | |
Cla10g01552 | 563 | SMART | brlzneu | 178 | 241 | IPR004827 | GO:0003700|GO:0006355 | |
Cla10g01552 | 563 | MobiDBLite | consensus disorder prediction | 144 | 159 | - | - | |
Cla10g01552 | 563 | Pfam | Seed dormancy control | 265 | 338 | IPR025422 | GO:0006351|GO:0043565 | |
Cla10g01552 | 563 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 180 | 224 | IPR004827 | GO:0003700|GO:0006355 | |
Cla10g01552 | 563 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 185 | 200 | IPR004827 | GO:0003700|GO:0006355 | |
Cla10g01552 | 563 | CDD | bZIP_HBP1b-like | 182 | 233 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g01072 | Cla-Chr8:23407805 | Cla10g01552 | Cla-Chr10:30926557 | 4.66E-22 | dispersed | |
Cla10g01552 | Cla-Chr10:30926557 | Cla10g01652 | Cla-Chr10:32179883 | 1.79E-46 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61911 | PF14144 | DOG1 | 1.00E-28 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g01552 | K14431 | - | csv:101219149 | 620.542 |