Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01555 ATGGGAAAGAGTGAAGAAGAACAGCCGCTGCCGGTTGGAGTGAGCTCCTCTGAGCTTTCTGACCGGAATGTGGAGAGCAGATGCGGCGGCGGTGGGTGCTCTGGGATTCGTAGACTGATTGCGGTGAGATGTGTCTTCTTCCTGTTATTATCGGCGGCTGTGTTTCTTTCTGCTATTTTTTGGCTGCCACCGTTCCTTTCCGATGGAAATTGGCCGGATCGGCCTATTGATTCTGCTTATAGAGATCATGAAATAGTAGCAAGTTTTCATGCTTGGAAGCCAGTTCCTTTTATGGAAAACCATATTTTTGAGCTTGAGGATAACATTTTTGGAGAAATACCCGTACCATTTGTCAAGGTGGTTATCCTCTCACTACAATCATTAGGTGGACCAAACGTAACAAAAATTGTTTTTGCGGTAGATTCTGATGCAAAGTATTCAAAAATTCCCCCAACATCTCAAAGTTTAATCAAGGATACCTTTGAAACATTGGTTATAAATGAACCTCCTCTGAGATTGAATGCATCATTATTCGGCAATACATCCTTATTCGAGGTGTTGAAATTTCCTGGAGGAATAACTATTATTCCTCCTCAGAGTGCATTTCCTCTGCAGGCGGCACAGATCTATTTCAACTTCACATTAAATTATTCTATTTATCAAATTCAAGTGAATTTTGATGATCTTACCAGCCAGTTGAGGTCAGGATTACATCTATCTCCTTATGAGAATTTGTATGTTAGCCTATCGAACAAAAGAGGTTCAACAATACATTCCCCCACTATTGTCCAGTCATCTGTTCTGATGGCAATTGGGACTAACTCATCGAAACAAAGGCTAAAACAGTTGGCTCAAACCATCACAAATTCTCATTCAGGAAACCTTGGCCTGAACAACACTGTATTTGGTAAGGTCAAGCAGGTGCGTCTTTCATCAGTCCTAAACCACTCTCTTGGTGGTGGTGGCAGTGCTCGGTCACCTTCACCTGCGCCTCTGCCTCATTCTCACCACCATCACCACCACCATCACCACCACCATCACCACCATCACCACCATTACCACCATCACCACCACCACCACAATCAGGATGCTGCATACTCACCTAGTCCTGGAACAGAGGAGCACAAACATGCACTGAAGAATGGGGTCTCATCTGCTCCCGAAGCTGGTTCATCTCCAGTGGAAAGTCCAACTGCAAATAAAAGAAACTATGAAGCTACTCCGCCTGCTTTTCAATATGGATATAAGAGGTCTTCAAGAAAAGTCAGAAAACAATCTCATTTAGGCCCTATTCCTTCTCGAAGCAGTCCTCCATTGTCACCATTCTTACGAGTAGGCCTGCCAGCACCTGTTTCTGATTCTATTTCTGCTTCAAGTCCACTGTCAGGTGTAGTTCTATCTAGTGTACAGTCTCCAAATACAGGCAGTGGACATGCAGAAAATTTTGAAAGAAGTCCCCCTTCAGTCTTACCACCTCAATTTTCTTGTGTTCGTGTTTATACCATTCGATGGACACTTGCGCTATTTCTACTAGTATGTTCCTTCTTCTTCTCTGCCATGGCGATCAACATCGTTGACCATCAAGTTCCCTCCGATTCCCACAATTTGTTCGACGTAACTTTCGATTCCGAGGAGCCAATTCTCACTCTTCTCACCACTTCACCATCCATGGTAGATGATTGGATATCCGAAACCCTCGCCATTCGAACTCCACCTCTCATCGTCGGCCTCGACATCGAATGGCGCCCTAATAATCGGTCCTACGACAACCCCGTCGCCACCTTGCAACTCTGCATCGGCCGCCGCTGCCTGATTCTGCAACTGATCCACACACCTGAGATCCCTAAATCTCTGTTCGAGTTTCTGGAAAACGAATCCTACACATTCGTAGGAGTGGGAATCGACGAGGATGCTGAAAAGCTCACCTGTGATTACGGATTGAAAGTGGGGAAGAGAGTGGATCTGAGGAATTTGGCTGAGAGTGTAACGGGAAGAGGAGATTTGAAGAATGCGGGATTGAAGAGATTGGGGAAAGAGGTTTTGGGGAAAGAGATTGAAAAGCCGAAGAGGGTGACGCTGAGTAGATGGGATCAACAGTGGCTTACTCTTAATCAGGTTAAGTATGCTTGTATTGATGCCTTTTTTTCGTTTGAGATTGGAAGGTTTTTGCAATCTTCATCCTATTAA 2187 44.67 MGKSEEEQPLPVGVSSSELSDRNVESRCGGGGCSGIRRLIAVRCVFFLLLSAAVFLSAIFWLPPFLSDGNWPDRPIDSAYRDHEIVASFHAWKPVPFMENHIFELEDNIFGEIPVPFVKVVILSLQSLGGPNVTKIVFAVDSDAKYSKIPPTSQSLIKDTFETLVINEPPLRLNASLFGNTSLFEVLKFPGGITIIPPQSAFPLQAAQIYFNFTLNYSIYQIQVNFDDLTSQLRSGLHLSPYENLYVSLSNKRGSTIHSPTIVQSSVLMAIGTNSSKQRLKQLAQTITNSHSGNLGLNNTVFGKVKQVRLSSVLNHSLGGGGSARSPSPAPLPHSHHHHHHHHHHHHHHHHHYHHHHHHHNQDAAYSPSPGTEEHKHALKNGVSSAPEAGSSPVESPTANKRNYEATPPAFQYGYKRSSRKVRKQSHLGPIPSRSSPPLSPFLRVGLPAPVSDSISASSPLSGVVLSSVQSPNTGSGHAENFERSPPSVLPPQFSCVRVYTIRWTLALFLLVCSFFFSAMAINIVDHQVPSDSHNLFDVTFDSEEPILTLLTTSPSMVDDWISETLAIRTPPLIVGLDIEWRPNNRSYDNPVATLQLCIGRRCLILQLIHTPEIPKSLFEFLENESYTFVGVGIDEDAEKLTCDYGLKVGKRVDLRNLAESVTGRGDLKNAGLKRLGKEVLGKEIEKPKRVTLSRWDQQWLTLNQVKYACIDAFFSFEIGRFLQSSSY 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30955961 30965531 + ClCG10G016280.2 Cla10g01555 283214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01555 728 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 513 - -
Cla10g01555 728 MobiDBLite consensus disorder prediction 332 361 - -
Cla10g01555 728 MobiDBLite consensus disorder prediction 316 435 - -
Cla10g01555 728 MobiDBLite consensus disorder prediction 1 26 - -
Cla10g01555 728 Gene3D - 537 725 IPR036397 GO:0003676
Cla10g01555 728 SMART 35exoneu6 555 724 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cla10g01555 728 MobiDBLite consensus disorder prediction 385 405 - -
Cla10g01555 728 CDD WRN_exo 552 721 - -
Cla10g01555 728 PANTHER F20B24.21 1 513 - -
Cla10g01555 728 SUPERFAMILY Ribonuclease H-like 561 724 IPR012337 -
Cla10g01555 728 Pfam 3'-5' exonuclease 556 724 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla04g00601 Cla10g01555 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01555 Cla-Chr10:30955961 Cla10g01556 Cla-Chr10:30967127 5.28E-59 tandem
Cla03g01687 Cla-Chr3:32765009 Cla10g01555 Cla-Chr10:30955961 3.66E-07 transposed
Cla05g00328 Cla-Chr5:2979410 Cla10g01555 Cla-Chr10:30955961 8.56E-17 transposed
Cla05g01047 Cla-Chr5:10773652 Cla10g01555 Cla-Chr10:30955961 1.11E-53 transposed
Cla10g01555 Cla-Chr10:30955961 Cla04g00601 Cla-Chr4:20139635 1.33E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01555 - - csv:101213172 769.229