Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01561 ATGGTTCTCTCTCTCATCCTTCTCTCTCTCCTCCTTCTCCTCGTCGCCTACAACCTCTACAACCGCCTCCGGTTCAAGCTCCCTCCAGGGCCACGGCCGCTTCCGGTGGTCGGAAACCTGTACGACGTGAAACCGGTCCGGTTCAGATGTTACGCGGAGTGGGCCAAGCAGTACGGTCCGATCATATCGGTTTGGTTCGGGTCGACGCTGAACGTAGTGGTGTCGAACACGGAGCTGGCAAGGGAAGTTCTGAAGGAGCACGACCAGAGCCTGGCGGACCGGCACCGGAGCCGATCGGCGGCGAAATTCAGCCGGGACGGGAAGGACCTGATTTGGGCGGATTATGGACCCCATTATGTGAAGGTGAGGAAAGTTTGTACAATCGAACTGTTCTCTCCGAAACGACTCGAATCTCTGAGGCCGATTAGAGAAGATGAAGTTTCCGCCATGGTTGAAGACATCTTCAACCACTGCACTAATTCTGAGAACTATGGAAAGAGCTTGAAGCTGAGGGAGTTTCTGGGAGCAGTTTCATTCAACAACATCACAAGGCTCGCATTTGGGAAGAGGTTTGTGAATTCCAATGGCGTTATGGATGAACAGGGCTTGGAATTCAAGGCCATTGTCGCCAATGGCCTCAAGCTCGGCGCCTCCCTGGCTATGGCCGAGCACATCCCTTGGCTCCGCTGGATGTTCCCTCTCGAAGAAGAAGCCTTCGCCAAGCACGGCGCCCGTCGCGACCGTCTCACCCGAGCCATCATGGAAGAGCACACCAAAGCTCGCAACCTGAGCGGCAATGTCAAGAACCACTTCGTTGATGCTCTCCTCACTCTCAAAGACAAGTACGATCTCAGTGAAGACACCATCATTGGCCTCCTTTGGGATATGATCACTGCCGGCATGGACACGACAGCGATTTCAGTGGAATGGGCGATGGCGGAGATCGTAAGAAACCCTAGAGTGCAAAAGAAGGTTCAGGAGGAACTAGACAATGCAATTGGGGTAGATCGGATCATGACAGAGAACGACTTCTCAAATCTTCCATATCTCCAATGCGTCGTAAAGGAGGCGATGAGATTACACCCACCGACGCCATTGATGCTGCCGCACCGATCCAACGCCAACGTGAAGATCGGCGGCTACGACATTCCCAAAGGATCGAACGTGCACGTGAACGTATGGGCGGTGGCACGTGACCCGGCAGTGTGGAAGAACCCGGAGGAATTCCGGCCGGAGCGGTTCTTTGAAGAGGATGTGGACATGAAAGGGCACGATCTGCGACTGCTGCCGTTCGGAGCAGGGCGGAGGGTTTGTCCAGGGGCTCAATTGGGGATTAATTTGGTGACATCAATGTTGGGGCACCTTCTGCACCACTTCGAGTGGACGCCGCCGCCGGGGATGAAGGCGGAGGAGATCGACATGACGGAGAGCCCTGGATTGGTGTCGTACATGAAGACGCCGGTGCAGGCTGTGGCCACTCCCAGGCTGCCTTCAGGACTGTACAAACGTGTGCCTGTGGACATAATGTTTGTGTTAATGGAAAAGGAAAACTCTTGCTTCTGTAAATCTGAAGTGTAG 1578 54.5 MVLSLILLSLLLLLVAYNLYNRLRFKLPPGPRPLPVVGNLYDVKPVRFRCYAEWAKQYGPIISVWFGSTLNVVVSNTELAREVLKEHDQSLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTIELFSPKRLESLRPIREDEVSAMVEDIFNHCTNSENYGKSLKLREFLGAVSFNNITRLAFGKRFVNSNGVMDEQGLEFKAIVANGLKLGASLAMAEHIPWLRWMFPLEEEAFAKHGARRDRLTRAIMEEHTKARNLSGNVKNHFVDALLTLKDKYDLSEDTIIGLLWDMITAGMDTTAISVEWAMAEIVRNPRVQKKVQEELDNAIGVDRIMTENDFSNLPYLQCVVKEAMRLHPPTPLMLPHRSNANVKIGGYDIPKGSNVHVNVWAVARDPAVWKNPEEFRPERFFEEDVDMKGHDLRLLPFGAGRRVCPGAQLGINLVTSMLGHLLHHFEWTPPPGMKAEEIDMTESPGLVSYMKTPVQAVATPRLPSGLYKRVPVDIMFVLMEKENSCFCKSEV 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31014768 31018697 - ClCG10G016350.1 Cla10g01561 283220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01561 525 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PRINTS E-class P450 group I signature 79 100 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PRINTS E-class P450 group I signature 351 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PRINTS E-class P450 group I signature 55 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PRINTS E-class P450 group I signature 177 195 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 Gene3D Cytochrome P450 21 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PANTHER CYTOCHROME P450 98A3 5 501 - -
Cla10g01561 525 SUPERFAMILY Cytochrome P450 28 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla10g01561 525 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 5 501 - -
Cla10g01561 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Cla10g01561 525 Pfam Cytochrome P450 28 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01997 Cla-Chr5:31746588 Cla10g01561 Cla-Chr10:31014768 5.71E-52 dispersed
Cla07g01383 Cla-Chr7:30965710 Cla10g01561 Cla-Chr10:31014768 2.64E-125 dispersed
Cla10g01561 Cla-Chr10:31014768 Cla01g01872 Cla-Chr1:33534605 1.07E-107 dispersed
Cla11g01116 Cla-Chr11:22630782 Cla10g01561 Cla-Chr10:31014768 8.14E-77 dispersed
Cla10g01561 Cla-Chr10:31014768 Cla01g01960 Cla-Chr1:34243021 8.31E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01561 K09754 - csv:101217257 915.22