Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g01569 ATGAGGGAAGATGATTCAAATTGGTTCTCAAAATGGGAACAACAACTTCCTTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGATATCACAAACTCAAATCCTCCCATTAATAACAATTCTCATCCACCGCCGCCTCCGCCGCCGCCTCCGGTTCTCACTCAGCCGAGTTCTGCAGATTTTGGGGATTCAGGGGATTTAGGGTCTGGCGCTGGCGACGAACCTGCCAGAACCCTGAAACGGCCGCGGCTTGTCTGGACTCCGCAGCTTCATAAGCGATTCGTTGACGCCGTTGCTCATTTGGGGATAAAAAATGCCGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACTCGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCGGCGGTAGTGGTGGCGGAGCTAGTGCCGGTGGTGGATTGCCTTCAGCCGCTTCAGATCCTGCCACCGATCATTTGTTTGCTAGTTCCCCTGTTCCGGCTCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTTCCCATCGGAGCTCTGCAGCATCACCACCACCAGATGGCCGCCGCCGCTCAGTACCACCGGCAAGTGACTCAGTTTGGGTCGCCGCCGAATGGGCAAGTTGAGCATCCGTTTTTGGCTCGCCCTGTTCACCGGATTGGAGCTCCGGTGAGTACTCCGGCGACGAATTATAGCGAGGATTTGGATACGGGTAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAATGATTAA 852 52.11 MREDDSNWFSKWEQQLPSPDELMPLSQTLITPDLALAFDITNSNPPINNNSHPPPPPPPPPVLTQPSSADFGDSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGASAGGGLPSAASDPATDHLFASSPVPAHFLHSARGNSDHFLPFVPIGALQHHHHQMAAAAQYHRQVTQFGSPPNGQVEHPFLARPVHRIGAPVSTPATNYSEDLDTGNGTGGRKVLTLFPTGND 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31101821 31102672 + ClCG10G016440.1 Cla10g01569 283228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g01569 283 MobiDBLite consensus disorder prediction 1 24 - -
Cla10g01569 283 Gene3D - 88 150 - -
Cla10g01569 283 SUPERFAMILY Homeodomain-like 88 148 IPR009057 -
Cla10g01569 283 MobiDBLite consensus disorder prediction 252 272 - -
Cla10g01569 283 MobiDBLite consensus disorder prediction 48 65 - -
Cla10g01569 283 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 283 - -
Cla10g01569 283 MobiDBLite consensus disorder prediction 37 90 - -
Cla10g01569 283 MobiDBLite consensus disorder prediction 10 24 - -
Cla10g01569 283 Pfam Myb-like DNA-binding domain 95 143 IPR001005 -
Cla10g01569 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 147 IPR017930 -
Cla10g01569 283 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 283 IPR044841 GO:0003700|GO:0006355
Cla10g01569 283 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 92 144 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g01569 Cla-Chr10:31101821 Cla05g01695 Cla-Chr5:28690664 7.86E-25 dispersed
Cla10g01569 Cla-Chr10:31101821 Cla04g00590 Cla-Chr4:19825042 6.41E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61913 PF00249 Myb_DNA-binding 2.00E-08 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g01569 - - csv:101216059 436.032